Return to main results Retrieve Phyre Job Id

Job DescriptionP23003
Confidence42.27%DateWed Jan 25 15:20:43 GMT 2012
Rank376Aligned Residues161
% Identity16%Templatec2qy6A_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200.... .....210.........220.........230... ...... 240
Predicted Secondary structure 




........














.................
Query SS confidence 


















. . . . . . . .




























. . . . . . . . . . . . . .





. . .
Query Sequence  NSFTQPNAAMNIQMLEWAL. . . . . . . . DVTKGSKGDLLELYCGNGNFSLALARNFD. . . . . . . . . . . . . . RVLATE. . . I
Query Conservation   



 
      
   
 ........         



 

 
  

 

    .............. 
 


... 
Alig confidence 


















........




























..............





...
Template Conservation 
 


  


 

  


    
  
          










 
 
                  
   
 
  

Template Sequence  DVYFSNDNGLEETRYVFLGGNQLEARFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPL
Template Known Secondary structure  SS
TTTTTGGG
SSSS

TTS
TTSS

SS

Template Predicted Secondary structure 


































Template SS confidence 















































































   46...50.........60.........70.........80.........90.........100.........110.........120.....
 
   241...... ..250........ .260.........270.........280.........290.......
Predicted Secondary structure 
...........



............




















Query SS confidence 






. . . . . . . . . . .










. . . . . . . . . . . .






































Query Sequence  AKPSVAA. . . . . . . . . . . AQYNIAANHID. . . . . . . . . . . . NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF
Query Conservation     

  ...........
  
   
 
 ............
                                  
  
Alig confidence 






...........










............





















...........





Template Conservation      
   
   
        
         
        
 
 
  


   
  
      ...........  



Template Sequence  TRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDRVTLDLWFGDINELISQLDDSLNQ. . . . . . . . . . . KVDAWF
Template Known Secondary structure 
TT
GGGT


S
S

S
GGGS
GGGTT...........
Template Predicted Secondary structure 




















...........
Template SS confidence 















































































   126...130.........140.........150.........160.........170.........180........ .190....
 
   298.300........ .310.........320.........330.........340.........350.........360..
Predicted Secondary structure 





........















Query SS confidence 










. . . . . . . .





















































Query Sequence  VDPPRSGLDSE. . . . . . . . TEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVL
Query Conservation   



 
    ........          





 
 

 


  
   
        
 

 
 


 
  
Alig confidence 










........



























..








...











Template Conservation 





 






 
 
  

     

 
 


 

 


 
  
..

 
 
 

... 
 




 
  
Template Sequence  LDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRRGLQEA. . GFTMQKRKG. . . FGRKREMLCGVM
Template Known Secondary structure 
SS
TTT
GGG

S


..T

...STT


Template Predicted Secondary structure 















..



...




Template SS confidence 








































































   197..200.........210.........220.........230.........240... ......250.. .......260....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions