Job Description P23003 Confidence 98.35% Date Wed Jan 25 15:20:43 GMT 2012 Rank 240 Aligned Residues 149 % Identity 9% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

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		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	L	E	W	A	L	D	V	T	K	G	S	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		E	L	L	A	H	M	G	G	C	T	K	K	E	L	K	E	V	L	I	V	D	G	F	D	L	E	L	A	H	Q	L	F	K	Y	D	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	P	H	F	H	E	V	K	N	N	K	N	F	T	H	A	K	Q	L	L	D	L	.	.	.	.
Template Known Secondary structure										T	T	S	S									S	S										T	T	S	S								S						G	G	G	T	T	T	S	T	T						T		T	T					S	S	G	G	G	S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.						.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																																	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.
Query Sequence		R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	S	G	L	D	S	E	T	E	K	M	V	Q	A	Y	P	R	I	L	Y	I	S	C	.	.	.	.	.	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	T	H	K	V	E	R	L	A	L	F	D	Q	F	P
Query Conservation																																																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	D	I	K	K	Y	D	L	I	F	C	L	Q	E	P	D	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	V	F	I	S	V	A	K	H	P	L	L	E	H	V	S	M	Q	N	A	L	K	N	M	G	G	V	F	S	V	A	M	P	F	V	A	P	L	R	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.											S	S												T	T														T	T	T														T	T		S								T	T		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		353	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	H	H	M	E	C	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	N	K	G	Y	I	Y	A
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions