Job Description P23003 Confidence 99.96% Date Wed Jan 25 15:20:43 GMT 2012 Rank 8 Aligned Residues 309 % Identity 15% Template c2as0A_ PDB info PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ph1915; PDBTitle: crystal structure of ph1915 (apc 5817): a hypothetical rna2 methyltransferase Resolution 1.80 Å

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		41	.	.	.	.	.	.	.	.	50	.	.													.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.						.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.														.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.														.	.	.	.	.
Query Sequence		V	S	H	Y	R	M	R	A	E	F	R	I	.	.	.	.	.	.	.	.	.	.	.	.	W	H	D	G	D	D	L	Y	H	I	I	F	D	Q	Q	T	K	.	.	.	S	R	I	R	V	D	S	F	P	A	A	S	E	.	.	.	.	.	L	I	N	Q	L	M	T	A	M	I	A	G	V	R	N	N	P	V
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.														.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		X	I	V	F	K	K	G	V	V	R	V	E	G	D	I	K	P	G	D	I	V	E	V	Y	T	R	G	G	K	F	L	G	K	G	F	A	N	P	N	S	N	I	X	V	R	I	V	T	K	D	K	D	V	E	I	N	K	D	L	F	K	R	R	I	K	K	A	N	E	Y	R	K	K	V	L	K	Y	T	N	V
Template Known Secondary structure						G	G	G						S				T	T								T	T											T	T	S	S								S		T	T				S																		T	S				S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.									.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																																															.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.																																															.	.	.	.	.	.	.	.
Query Sequence		L	R	H	K	L	F	Q	I	D	.	.	.	.	Y	L	T	T	L	S	N	Q	A	V	V	S	L	L	Y	H	K	K	L	D	D	E	W	R	Q	E	A	E	A	L	R	D	A	L	R	A	Q	N	L	N	V	H	L	I	G	R	.	.	.	.	.	.	.	.	A	T	K	T	K	I	E	L	D	Q	D	Y	I
Query Conservation											.	.	.	.																																															.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	R	X	V	Y	G	E	A	D	Y	L	P	G	L	I	V	D	R	F	N	D	I	A	S	L	Q	I	S	S	A	G	X	E	R	F	K	L	D	V	A	E	A	I	X	E	V	E	P	G	I	E	T	V	F	E	K	N	T	G	R	S	R	R	R	E	G	L	P	E	I	E	R	V	L	L	G	K	E	K	Y
Template Known Secondary structure							G	G	G	G	T		T	T							T	T													T	T													T	T										S						T	T											S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																												.																						.
Query SS confidence																																												.																						.
Query Sequence		D	E	R	L	P	V	A	G	K	E	M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	A	L	D	V	T	K	G	S	.	K	G	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	.	F	D	R	V	L	A	T	E	I	A	K	P	S	V	A
Query Conservation																																												.																						.
Alig confidence									.	.								.	.																									.																						.
Template Conservation									.	.								.	.
Template Sequence		R	T	I	I	Q	E	G	.	.	R	A	K	F	I	V	D	.	.	X	R	G	Q	K	T	G	F	F	L	D	Q	R	E	N	R	L	A	L	E	K	W	V	Q	P	G	D	R	V	L	D	V	F	T	Y	T	G	G	F	A	I	H	A	A	I	A	G	A	D	E	V	I	G	I	D	K	S	P	R	A	I	E
Template Known Secondary structure								T	.	.	T							.	.	S	S	S	S	S	S				S	T	T								G	G	G			T	T						T	T		T	T	T									T	T		S							S
Template Predicted Secondary structure									.	.								.	.
Template SS confidence
		179	180	.	.	.	.	.			.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.																.	.	.	.	.	310
Predicted Secondary structure																.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	.	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	S	E	T	E
Query Conservation																.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	K	E	N	A	K	L	N	G	V	E	D	R	X	K	F	I	V	G	S	A	F	E	E	X	E	K	L	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	K	G	E	K	F	D	I	V	V	L	D	P	P	A	F	V	Q	H	E	K	D	L	K	A	G	L	R	A	Y	F	N	V	N	F	A	G	L
Template Known Secondary structure										T	T		G	G	G						S												.	.	.	.	.	.	.	.	.	.	.	.	T	T													S		S	S	G	G	G
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.													.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.							.	.	.	340	.	.	.	.	.						.	.	.	.						350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.										.	.	.	.	.					.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.										.	.	.	.	.					.	.	.	.	.
Query Sequence		K	M	V	Q	A	Y	P	R	I	L	Y	I	S	C	N	P	E	T	L	C	K	N	L	E	T	L	.	.	.	.	.	.	S	Q	T	H	K	V	E	R	L	.	.	.	.	.	A	L	F	D	.	.	.	.	.	Q	F	P	Y	T	H	H	M	E	C	G	V	L	L	T	A
Query Conservation																												.	.	.	.	.	.										.	.	.	.	.					.	.	.	.	.
Alig confidence																												.	.	.	.	.	.										.	.	.	.	.					.	.	.	.	.
Template Conservation
Template Sequence		N	L	V	K	D	G	G	I	L	V	T	C	S	C	S	Q	H	V	D	L	Q	X	F	K	D	X	I	I	A	A	G	A	K	A	G	K	F	L	K	X	L	E	P	Y	R	T	Q	A	P	D	H	P	I	L	X	A	S	K	D	T	E	Y	L	K	C	L	F	L	Y	V	E
Template Known Secondary structure		T	T														T	T	S																T	T						S	S			B		S		T	T	S				T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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