Job Description P23003 Confidence 100.00% Date Wed Jan 25 15:20:43 GMT 2012 Rank 2 Aligned Residues 336 % Identity 23% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		H	L	P	T	E	Q	Y	E	A	Q	L	A	E	K	V	V	R	L	Q	S	M	M	A	P	F	S	D	L	V	P	E	V	F	R	S	P	V	S	H	Y	R	M	R	A	E	F	R	I	W	H	D	G	.	.	D	D	L	Y	H	I	I	F	D	Q	Q	T	K	S	R	I	R	V	D	S	F	P	A	A	S	E
Query Conservation																																																						.	.
Alig confidence																										.	.	.																										.	.
Template Conservation																										.	.	.
Template Sequence		Q	Q	Q	H	A	S	V	D	L	Q	Q	R	S	K	S	A	A	L	A	R	L	X	K	H	.	.	.	D	V	S	E	V	I	A	D	V	P	W	G	Y	R	R	R	A	R	L	S	L	N	Y	L	P	K	T	Q	Q	L	Q	X	G	F	R	K	A	G	S	S	D	I	V	D	V	K	Q	C	P	I	L	A	P
Template Known Secondary structure		S		T	T	B																		T	S	.	.	.										S	S	S		B	S										T	T	T	T								B	T	T	S	S						S			T	T	B
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	N	Q	L	M	T	A	M	I	A	G	V	R	N	N	P	V	L	R	H	K	L	F	Q	I	D	Y	L	T	T	L	S	N	Q	A	V	V	S	L	L	Y	H	K	K	L	D	D	E	W	R	Q	E	A	E	A	L	R	D	A	L	R	A	Q	N	L	N	V	H	L	I	G	R	A	T	K	T	K	I	E
Query Conservation
Alig confidence																							.																									.	.	.	.
Template Conservation																							.																									.	.	.	.
Template Sequence		Q	L	E	A	L	L	P	K	V	R	A	C	L	G	S	L	Q	A	X	R	H	.	L	G	H	V	E	L	V	Q	A	T	S	G	T	L	X	I	L	R	H	T	A	P	L	S	.	.	.	.	S	A	D	R	E	K	L	E	R	F	S	H	S	E	G	L	D	L	Y	L	A	P	D	S	E	I	L	E	T	V
Template Known Secondary structure															T	T		G	G	G	G	G	.										T	T									S	S				.	.	.	.															T							S	S	S	S
Template Predicted Secondary structure																							.																									.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		L	D	Q	D	Y	I	D	E	R	L	P	V	A	G	K	E	M	I	Y	R	Q	V	E	N	S	F	T	Q	P	N	A	A	M	N	I	Q	M	L	E	W	A	L	D	V	T	K	G	S	K	G	.	D	L	L	E	L	Y	C	G	N	G	N	F	S	L	A	L	A	R	N	F	D	R	V	L	A	T	E	I	A
Query Conservation																																																				.
Alig confidence											.	.	.	.	.																																					.
Template Conservation											.	.	.	.	.
Template Sequence		S	G	E	X	P	W	Y	D	S	.	.	.	.	.	N	G	L	R	L	T	F	S	P	R	D	F	I	Q	V	N	A	G	V	N	Q	K	X	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	X	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V
Template Known Secondary structure											.	.	.	.	.	T	T							S	S	S				S	B																T			T	T							S		T	T	T	T	T						T	T	S	S							S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		K	P	S	V	A	A	A	Q	Y	N	I	A	A	N	H	I	D	N	V	Q	I	I	R	M	A	A	E	E	F	T	Q	A	M	N	G	V	R	E	F	N	R	L	Q	G	I	D	L	K	S	Y	Q	C	E	T	I	F	V	D	P	P	R	S	G	L	D	S	E	T	E	K	M	V	Q	.	A	Y	P	R	I	L
Query Conservation																																																																											.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	.	.	.	.	.	.	.	.	.	.	.	.	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	X	Q	Q	I	I	K	L	E	P	I	R	I	V
Template Known Secondary structure															T	T			S								T	T	S			S	S	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T			S								T	T															S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.													.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		Y	I	S	C	N	P	E	T	L	C	K	N	L	E	T	L	S	Q	.	T	H	K	V	E	R	L	A	L	F	D	Q	F	P	Y	T	H	H	M	E	C	G	V	L	L	T	A
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		Y	V	S	C	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A	R	L	A	X	L	D	X	F	P	H	T	G	H	L	E	S	X	V	L	F	S	R
Template Known Secondary structure					S															T	T												S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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