Job Description P0AA86 Confidence 20.28% Date Thu Jan 5 11:12:11 GMT 2012 Rank 311 Aligned Residues 65 % Identity 17% Template c3h7hA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		V	W	A	T	W	C	P	T	C	R	A	E	H	Q	Y	L	N	Q	L	S	A	Q	G	I	R	V	V	G	M	N	Y	K	D	D	R	Q	K	A	I	S	W	L	K	E	L	G	N	P	Y	A	L	S	L	F	D	G	D	G	M	L	G	L	D	L	G	V	Y	G	.	A	P	E	T	F	L	I	D	G	N	G
Query Conservation																																																																						.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	Y	D	G	C	D	N	C	D	A	Y	L	Q	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	N	R	E	M	V	Y	D	C	T	S	S	S	F	D	G	I	I	A	M	M	S	P	E	D	S	W	V	S	K	W	Q	R	V	S	N	F	K	P	G	V	Y	A	V	S	V	T	G
Template Known Secondary structure								T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T											S									S		G	G	G							T	T		T	T	S		S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.																	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		154	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		92	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions