Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 86 Aligned Residues 286 % Identity 18% Template c3t8qA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 family protein from hoeflea phototrophica Resolution 2.00 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																			.
Predicted Secondary structure																		.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q
Query Conservation																		.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		A	D	I	E	T	F	A	N	E	F	V	C	F	V	K	V	T	T	D	S	G	E	T	G	W	G	Q	V	A	P	Y	Y	A	.	.	.	.	.	.	D	I	T	A	Q	V	L	H	R	Q	V	A	P	Y	A	L	G	K	P	A	L	D	I	D	Y	L	V	D	I	I	P	E	K	E	H	K	F	P	G	S	Y
Template Known Secondary structure										S	S									T	T	S									S	S	S		.	.	.	.	.	.											T					T	T	S	B	T	T													T	T	T			S
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.															.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																.	.	.	.	.
Query Sequence		M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V	K	V	G	L	Y	E	.	.	.	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																.	.	.	.	.
Template Conservation
Template Sequence		L	R	R	A	L	G	G	L	D	T	A	L	W	D	L	R	G	R	L	E	G	K	P	V	C	E	L	I	G	G	T	P	G	T	V	R	A	Y	G	S	S	M	K	R	D	I	T	P	K	D	E	A	A	R	L	S	R	L	R	D	R	F	G	F	D	A	F	K	F	R	I	G	A	E	C	G	R	G	Q	D
Template Known Secondary structure																						T		B					T	T			S												S	S	S																										S		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
				139	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure		.	.														.																																												.	.
Query SS confidence		.	.														.																																												.	.
Query Sequence		.	.	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D
Query Conservation		.	.														.																																												.	.
Alig confidence		.	.														.																															.	.	.											.	.
Template Conservation																																																.	.	.
Template Sequence		E	W	P	G	R	T	E	E	I	V	P	T	I	R	A	A	M	D	D	S	V	A	L	L	V	D	A	N	S	C	Y	G	P	E	Q	A	I	E	V	G	K	M	L	E	Q	N	.	.	.	G	I	S	H	Y	E	E	P	C	P	Y	W	E	Y	E	Q	T	Q	Q	V	T	N	A	L	S	I	D	V	T	G	G
Template Known Secondary structure		S	S	T	T													S		T	T	S							T	T																	T	.	.	.	T								S		T	T													S	S
Template Predicted Secondary structure																																																.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		214	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																																																																	.	.	.	.
Query SS confidence												.	.																																																																	.	.	.	.
Query Sequence		E	S	L	R	E	P	D	F	A	F	.	.	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	.	.	.	.
Query Conservation												.	.																																																																	.	.	.	.
Alig confidence												.	.																																										.																							.	.	.	.
Template Conservation																																																							.
Template Sequence		E	Q	D	C	E	L	Q	N	W	R	R	M	I	E	M	K	A	V	D	I	V	Q	P	D	I	C	Y	L	G	G	I	T	R	T	L	R	V	A	E	M	A	H	K	A	G	L	P	C	T	P	H	A	A	.	N	L	S	M	V	T	L	F	T	M	H	L	L	R	A	I	P	N	A	G	K	Y	L	E	F	S
Template Known Secondary structure		T	T													T	T			S										T	S														T	T			B						.	S	T	T											T	T		T	T	B		S
Template Predicted Secondary structure																																																							.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
				288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		I	E	G	E	D	Y	Y	P	W	Q	D	D	L	F	V	A	S	P	Y	E	I	V	D	G	K	A	T	V	T
Template Known Secondary structure					T	T	T		G	G	G	T	T		B	S	S		S				B	T	T
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions