Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 69 Aligned Residues 310 % Identity 13% Template c3sqsA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of a putative mandelate racemase/muconate2 lactonizing protein from dinoroseobacter shibae dfl 12 Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.									.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure													.	.	.	.	.	.	.	.																			.	.	.	.	.	.						.																											.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.																			.	.	.	.	.	.						.																											.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	.	.	.	.	.	.	.	.	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	.	.	.	.	.	.	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	.	.	.	.	.
Query Conservation													.	.	.	.	.	.	.	.																			.	.	.	.	.	.						.																											.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																			.	.	.	.	.	.						.																											.	.	.	.	.
Template Conservation
Template Sequence		M	T	K	I	K	S	V	R	T	R	V	W	N	W	T	G	P	T	V	P	P	Q	G	N	F	C	T	N	A	S	D	A	L	W	I	A	S	F	R	F	H	Q	W	L	T	C	E	V	E	T	E	D	G	T	I	G	I	G	N	A	A	L	A	P	N	V	V	K	Q	A	I	D	E	W	Y	A	P	L	V	I
Template Known Secondary structure																	S						S	S		B				G	G	G	G	S								S										T	T	S									S	S											T	T					T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
									61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.														.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure		.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K
Query Conservation		.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	D	P	F	D	Y	A	Y	L	W	E	K	M	Y	R	R	T	H	A	W	G	R	K	G	I	G	M	T	A	I	S	A	I	D	I	A	I	W	D	L	M	G	K	L	V	G	K	P	V	F	K	L	L	G	G	R	T	K	E	K	I	P	V	Y	Y	S	K	L	Y	A	D	S	I	P	A	M	Q	A	E
Template Known Secondary structure		T	S		G	G	G												T					S	S	T																						T		B						T				S	S	S										B
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		121	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure					.	.															.	.	.	.	.	.															.
Query SS confidence					.	.															.	.	.	.	.	.															.
Query Sequence		L	A	D	.	.	M	P	G	E	K	V	A	K	V	K	V	G	L	Y	.	.	.	.	.	.	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E
Query Conservation					.	.															.	.	.	.	.	.															.
Alig confidence					.	.															.	.	.	.	.	.															.																															.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		A	E	E	A	Q	K	H	G	Y	Q	G	Y	K	T	R	F	G	Y	G	P	K	D	G	P	A	G	M	R	E	N	L	K	R	V	E	A	L	R	E	V	L	G	Y	D	V	D	L	M	L	E	C	Y	M	G	W	N	L	D	Y	T	K	R	M	L	P	K	L	E	R	F	.	.	.	E	P	R	W	L	E	E
Template Known Secondary structure							T	T	T		S										G	G	G																					S	S	S							T	T		S													G	G	G	.	.	.			S
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.
		192	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure					.	.																													.	.
Query SS confidence					.	.																													.	.
Query Sequence		P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S
Query Conservation					.	.																													.	.
Alig confidence					.	.																													.	.
Template Conservation
Template Sequence		P	V	I	A	D	D	V	A	G	Y	A	E	L	N	A	M	G	I	V	P	I	S	G	G	E	H	E	F	S	V	M	G	C	A	E	L	I	N	R	K	A	V	S	V	L	Q	Y	D	T	N	R	V	G	G	I	T	A	A	Q	K	I	N	A	I	A	E	A	A	Q	I	I	V	I	P	H	A	G	Q	M	H
Template Known Secondary structure			S		T	T											T		S	S						T	T			S										T	T			S										T																T						S	S		S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Y	H	L	T	M	A	N	M	N	C	P	I	S	E	Y	F	P	V	F	D	V	E	V	G	N	E	L	F	Y	Y	I	F	D	G	D	P	E	A	V	D	G	Y	L	Q	L
Template Known Secondary structure								T		T	T									S			S	S	S	S	T	T	T												B	T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions