Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 23 Aligned Residues 297 % Identity 18% Template c3qldB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: structure of probable mandelate racemase (aalaa1draft_2112) from2 alicyclobacillus acidocaldarius Resolution 1.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																				.															.	.																											.	.	.
Query SS confidence																																				.															.	.																											.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	.	.	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	.	.	.
Query Conservation																																				.															.	.																											.	.	.
Alig confidence																																				.															.	.																											.	.	.
Template Conservation
Template Sequence		L	Q	T	C	V	L	H	R	L	S	L	P	L	K	F	P	X	R	T	A	H	G	H	I	R	E	K	Q	A	I	L	V	Q	L	V	D	A	D	G	I	E	G	W	S	E	C	V	A	L	A	E	P	T	Y	T	E	E	C	T	D	T	A	W	V	X	L	V	H	H	L	V	P	R	F	A	R	W	L	R	A
Template Known Secondary structure																					T	T																T	T	S										B	S	S	T	T	S	S	S		B											T										T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
														75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		A	D	V	D	P	R	T	V	C	E	A	L	R	D	V	R	G	N	R	X	S	V	A	A	I	E	X	A	V	W	D	W	Y	A	A	R	T	G	Q	P	L	V	G	L	L	G	G	G	R	D	R	V	E	V	S	A	T	L	G	X	S	E	S	L	D	V	L	I	Q	S	V	D	A	A	V	E	Q	G	F	R
Template Known Secondary structure						G	G	G	G	G	G	G	G	T	T			S																					T								T				S				B								S															T	T		S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		V	A	K	V	K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	T	.	.	R	D	D	S	R	A	F	A	R	E	T
Query Conservation																																																																					.	.
Alig confidence										.	.	.																																				.							.	.	.												.	.
Template Conservation										.	.	.																																				.							.	.	.
Template Sequence		R	V	K	L	K	I	A	P	.	.	.	G	R	D	R	A	A	I	K	A	V	R	L	R	Y	P	D	L	A	I	A	A	D	A	N	G	S	Y	R	P	E	D	A	P	V	L	.	R	Q	L	D	A	Y	.	.	.	D	L	Q	F	I	E	Q	P	L	P	E	D	D	W	F	D	L	A	K	L	Q	A	S	L
Template Known Secondary structure								B	T	.	.	.	T	B	S												T	T	S							T	T				G	G	G					.			G	G	G	G	.	.	.			S						S		T	T											T
Template Predicted Secondary structure										.	.	.																																				.							.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D
Query Conservation																		.	.
Alig confidence																		.	.
Template Conservation
Template Sequence		R	T	P	V	C	L	D	E	S	V	R	S	V	R	E	L	K	L	T	A	R	L	G	A	A	R	V	L	N	V	K	P	G	R	L	G	G	F	G	A	T	L	R	A	L	D	V	A	G	E	A	G	X	A	A	W	V	G	G	X	Y	E	T	G	V	G	R	V	H	G	L	I	A	A	A	L	P	L	X	R
Template Known Secondary structure		S	S					S	T	T			S											T			S										T	S														T	T																						T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		285	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		T	I	P	G	L	D	.	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		Y	A	T	D	L	G	P	S	D	R	Y	F	E	Q	D	V	L	K	E	P	I
Template Known Secondary structure		S		B	S				G	G	G	T		S	S		S	B	S	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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