Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 90 Aligned Residues 301 % Identity 14% Template c3n4fD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from geobacillus sp. y412mc10 Resolution 1.88 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.														.
Query SS confidence																							.	.														.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	.	.	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L
Query Conservation																							.	.														.
Alig confidence																							.	.														.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	K	I	E	F	A	K	L	T	G	E	R	A	R	S	A	G	A	N	G	R	I	G	V	H	G	K	S	C	T	V	D	I	A	R	I	T	I	D	G	Q	T	G	Y	G	S	S	I	H	X	T	P	.	.	.	.	.	.	.	.	.	.	E	W	A	E	D	V	I	G	R	R	L	L	D	L	F	D	D
Template Known Secondary structure																				B		S	S	S																	T	T									S				.	.	.	.	.	.	.	.	.	.					T	T	T	T		B	G	G	G	S	B		T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.											.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		78	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																														.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure				.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	.	.	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	L	C	N	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	D	L	I	L	K	L	A	D	M	P	G
Query Conservation				.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	G	R	L	R	E	A	Y	R	L	Q	L	E	Y	P	V	L	D	W	L	G	Q	R	Q	G	K	P	V	Y	D	L	V	S	G	A	H	L	E	T	G	A	S	L	V	V	P	C	Y	D	T	S	L	Y	F	D	D	L	H	L	A	D	E	R	A	A	V	A	L	X	Q	E	E	A	X	Q	G	Y	A	K	G
Template Known Secondary structure		T	S		B		T	T	T																	T		B					T			T	T	S		T	T														B			T	T																				T	T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		127	.	.	130	.	.	.	.	.	.	.									.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.															.																																												.
Query SS confidence													.	.	.	.	.	.	.	.															.																																												.
Query Sequence		E	K	V	A	K	V	K	V	G	L	Y	.	.	.	.	.	.	.	.	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	T	R
Query Conservation													.	.	.	.	.	.	.	.															.																																												.
Alig confidence													.	.	.	.	.	.	.	.															.																															.	.	.											.
Template Conservation																																																																		.	.	.
Template Sequence		Q	R	H	F	K	I	K	V	G	R	G	G	R	H	X	P	L	W	E	G	T	K	R	D	I	A	I	V	R	G	I	S	E	V	A	G	P	A	G	K	I	X	I	D	A	N	N	A	Y	N	L	N	L	T	K	E	V	L	A	A	L	S	D	V	.	.	.	N	L	Y	W	L	E	E	A	F	H	E	D	E
Template Known Secondary structure											T	T	T	T	T	S																						T	T								T	T														T	T	T	S	.	.	.								S	S	S
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240
		197	.	.	200	.	.	.	.						.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure										.	.	.	.	.																			.
Query SS confidence										.	.	.	.	.																			.
Query Sequence		D	D	S	R	A	F	A	R	.	.	.	.	.	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G
Query Conservation										.	.	.	.	.																			.
Alig confidence										.	.	.	.	.																			.																	.																										.
Template Conservation																																																		.																										.
Template Sequence		A	L	Y	E	D	L	K	E	W	L	G	Q	R	G	Q	N	V	L	I	A	D	G	E	G	L	A	S	P	H	L	I	E	W	A	T	R	G	R	V	D	V	L	Q	Y	D	I	I	W	.	P	G	F	T	H	W	X	E	L	G	E	K	L	D	A	H	G	L	R	S	A	P	H	C	Y	.	G	N	A	Y	G
Template Known Secondary structure															T										S	S			T	T							T	T	S							B	T	T	T	.	B															T	T						B			.	S
Template Predicted Secondary structure																																																		.																										.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	.	W	P	G	S	T	L	P	V	V	E	V	D	A	L
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		I	Y	A	S	G	H	L	S	A	A	V	R	N	F	E	F	V	E	Y	D	D	I	T	I	E	G	X	D	V	S	G	Y	R	I	E	N	G	E	I	H	V	P	A	T	P	G	F
Template Known Secondary structure									T	T	T		T	T	B											T	T				T	T					T	T							S	S	B	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions