Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 70 Aligned Residues 309 % Identity 18% Template c3mznA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glucarate dehydratase; PDBTitle: crystal structure of probable glucarate dehydratase from2 chromohalobacter salexigens dsm 3043 Resolution 1.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.												.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	.	.	.	.	.	.	.	.	.	.	.	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N
Query Conservation																																				.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	K	M	N	V	V	P	V	A	G	E	D	G	F	L	L	N	L	S	G	G	H	E	P	W	F	I	R	C	V	L	V	L	E	D	E	S	G	N	R	G	V	G	E	I	P	S	S	E	G	I	L	N	G	L	E	K	C	R	S	L	V	E	G	A	R	V	N	E	V	K	Q	V	L	S	R	A	R	G
Template Known Secondary structure																	B			T	T					S												T	T	S																				T					T	T		B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		69	70	.	.	.	.	.	.									.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure										.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	W	L	A	G	D	C	E	.	.	.	.	.	.	.	.	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	L	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	A	Q	G	G	P	E	E	R	G	R	Q	T	F	D	L	R	V	A	V	H	V	I	T	A	I	E	S	A	L	F	D	L	F	G	Q	A	L	G	M	P	V	A	D	L	L	G	Q	Y	G	R	Q	R	D	E	V	E	A	L	G	Y	L	F	L	L	G	D	P	D	K	T	D	L	P	Y	P	R	V	A
Template Known Secondary structure				G	G	G							S	S	S	S				S																					T		B	G	G	G	G	S	T	T	T					S				B							B			G	G	G	S	S	S						S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
															111	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	D	P	D	D	L	I	L	K	L	A	D	M	P	.	.	.	G	E	K	V	A	K	V	K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		D	P	V	D	A	W	D	E	V	R	Y	R	E	A	M	T	P	E	A	V	A	N	L	A	R	A	A	Y	D	R	Y	G	F	K	D	F	K	L	K	G	G	V	L	R	G	E	E	E	A	D	C	I	R	A	L	H	E	A	F	P	E	A	R	L	A	L	D	P	N	G	A	W	K	L	D	E	A	V	R	V
Template Known Secondary structure		S			S						T	T	S		B		S																		S							S	S	S																	T	T	S							T	T		B
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.							.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																													.	.
Query SS confidence																							.	.	.	.	.	.																													.	.
Query Sequence		A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	T	.	.	.	.	.	.	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	F	.	.	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R
Query Conservation																							.	.	.	.	.	.																													.	.
Alig confidence								.	.	.	.												.	.	.	.	.	.																													.	.														.
Template Conservation								.	.	.	.																																																													.
Template Sequence		L	E	P	I	K	H	.	.	.	.	L	L	S	Y	A	E	D	P	C	G	Q	E	G	G	F	S	G	R	E	T	M	A	E	F	K	K	R	T	G	L	P	T	A	T	N	M	I	A	T	D	Y	K	Q	L	Q	Y	A	V	Q	L	N	S	V	D	I	P	L	A	D	C	.	H	F	W	T	M	Q	G	A	V
Template Known Secondary structure			G	G	G	G	G	.	.	.	.	G		S				S	S	B			B	T	T	B																				S	S	S	S	S	S											T			S			B				.
Template Predicted Secondary structure								.	.	.	.																																																													.
Template SS confidence
		245	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	.	G	S	T	L	P	V	V	E	V	D
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		A	V	G	E	L	C	N	E	W	G	M	T	W	G	S	H	S	N	N	H	F	D	I	S	L	A	M	M	T	H	V	A	A	A	C	P	G	E	I	T	A	I	D	T	H	W	I	W	Q	D	G	Q	R	I	T	R	E	P	F	Q	I	R	D	G	K	L	T	V	P
Template Known Secondary structure										T	T				B					S															T			S					B								T	T			S	B	S	S					B	T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions