Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 47 Aligned Residues 304 % Identity 15% Template c3h12B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase from bordetella2 bronchiseptica rb50 Resolution 1.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.														.
Query SS confidence																							.	.														.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	.	.	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L
Query Conservation																							.	.														.
Alig confidence																							.	.														.																.	.	.	.	.
Template Conservation																																																						.	.	.	.	.
Template Sequence		I	T	E	V	K	A	H	A	L	S	T	P	I	P	E	R	M	R	V	E	S	G	A	G	L	K	L	N	R	Q	M	I	L	V	E	V	R	T	D	E	G	V	T	G	V	G	S	P	S	G	P	Y	.	.	.	.	.	D	L	A	V	L	K	R	A	I	E	D	V	I	G	P	Q	L	I	G	E	D	P	A
Template Known Secondary structure																G	G	G					T	T			B													T	T	S									S	S	S	.	.	.	.	.												T	T					T	T	S		T	T
Template Predicted Secondary structure																																																						.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		78																						.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	N	Y	L	W	H	K	V	F	H	G	E	V	S	R	N	L	G	H	R	S	V	G	I	A	A	M	S	G	V	D	I	A	L	W	D	L	K	G	R	A	M	N	Q	P	I	Y	Q	L	L	G	G	K	F	H	T	R	G	V	R	A	Y	A	S	S	I	Y	W	D	L	T	P	D	Q	A	A	D	E	L
Template Known Secondary structure														T							S	S	S																						T	S	B					T	T	S		S		S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		122	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.
Predicted Secondary structure				.	.																																.																																									.	.
Query SS confidence				.	.																																.																																									.	.
Query Sequence		A	D	.	.	M	P	G	E	K	V	A	K	V	K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	A	I	P	.	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R
Query Conservation				.	.																																.																																									.	.
Alig confidence				.	.														.																		.																												.	.	.											.	.
Template Conservation																			.																																														.	.	.
Template Sequence		A	G	W	V	E	Q	G	F	T	A	A	K	L	K	V	G	R	.	A	P	R	K	D	A	A	N	L	R	A	M	R	Q	R	V	G	A	D	V	E	I	L	V	D	A	N	Q	S	L	G	R	H	D	A	L	A	M	L	R	I	L	D	E	A	.	.	.	G	C	Y	W	F	E	E	P	L	S	I	D	D	I
Template Known Secondary structure								T		S							S	S	.																		S	S	S							T	T																	T	.	.	.	T		S				S		S		T	T
Template Predicted Secondary structure																			.																																														.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.				.	.	.	.	.	.	.	.	230	.	.	.	.	.
		197	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure											.																		.	.
Query SS confidence											.																		.	.
Query Sequence		D	D	S	R	A	F	A	R	E	.	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q
Query Conservation											.																		.	.
Alig confidence											.																		.	.																																					.
Template Conservation																																																																			.
Template Sequence		E	G	H	R	I	L	R	A	Q	G	T	P	V	R	I	A	T	G	E	N	L	Y	T	R	N	A	F	N	D	Y	I	R	N	D	A	I	D	V	L	Q	A	D	A	S	R	A	G	G	I	T	E	A	L	A	I	S	A	S	A	A	S	A	H	L	A	.	W	N	P	H	T	F	N	D	I	I	T	V	A	A
Template Known Secondary structure									T	T			S	S						T	T													T	T			S						T	T	T	S	S															T	T			.						T	T	S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D	.	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		N	L	H	L	V	A	A	S	P	H	P	A	M	F	E	W	D	I	T	H	N	D	L	M	T	R	L	A	S	Y	D	L	K	L	E	N	G	L	V	Q	P	P
Template Known Secondary structure									S	S	S									S	S		G	G	G	T	T	S	B	S						B	T	T
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions