 |
Job Description | P29208 | Confidence | 95.34% | Date | Thu Jan 5 11:45:36 GMT 2012 |
Rank | 159 | Aligned Residues | 117 |
% Identity | 18% | Template | c3gr7A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:nadph dehydrogenase; |
PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form
|
Resolution | 2.30 Å |
|
 |
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 140 | . | . | . | |
|
|
|
. | . | . | . | . | . | 150 | . | . | . | . | |
. | . | . | . | . | 160 | . | . | . | |
|
|
|
. | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |
|
| . | . | . | . |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
Query Sequence |   |
I | L | K | L | A | D | M | P | G | E | K | V | A | K | V | K | V | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | Y | E | A | V | R | D | G | . |
. |
. |
. |
M | V | V | N | L | L | L | E | A | I | P | . |
D | L | H | L | R | L | D | A | N | . |
. |
. |
. |
R | A | W | T | P |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   | . | . | . | . |   |   |
|   |   |   |
|   |   |   |   | . |
|   |   |
|   |
|
|
|
| . | . | . | . |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |
|
|
|
|
|
|
|
|
|   |   |   |
|
|
|   |   |
|
|
|
|
|   |   |
|   |
|
|
|   |
|
|
|
|   |
|
|
|   |
|   |   |   |
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |
Template Sequence |   |
G | A | R | R | A | K | E | A | G | F | D | V | I | E | I | H | A | A | H | G | Y | L | I | N | E | F | L | S | P | L | S | N | R | R | Q | D | E | Y | G | G | S | P | E | N | R | Y | R | F | L | G | E | V | I | D | A | V | R | E | V | W | D | G | P | L | F | V | R | I | S | A | S | D | Y | H | P | D | G | L | T | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  |  |
| T | T | T |
|
|
|
| S | T | T | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |
|  |  |  |  |  |  | S |
|
|
| S | T | T | S |
|
| G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
149 | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . |
  |
  |   |
169 | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | |
|
. | . | . | . | . | . | . | 230 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  | . | . |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | K | G | Q | Q | F | A | K | Y | V | N | P | D | Y | R | D | R | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | F | L | E | E | P | C | K | T | R | D | D | S | R | A | F | A | R | E | T | G | I | A | I | A | W | D | E | S | L | R | E | P | D | F | A | . |
. |
F | V | A | E | E | G | V | R | A | V | V | I |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
| . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |   |   | . | . |   |   |   |   |   |   |   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|
|
|   |
|   |   |   |
|
|
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|
|
|   |   |
|
|
|   |
|   |
|   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |
|
Template Sequence |   |
K | D | Y | V | P | Y | A | K | R | M | K | E | Q | G | V | D | L | V | D | V | S | S | G | A | I | V | P | A | R | M | N | V | Y | P | G | Y | Q | V | P | F | A | E | L | I | R | R | E | A | D | I | P | T | G | A | V | G | L | I | T | S | G | W | Q | A | E | E | I | L | Q | N | G | R | A | D | L | V | F | L |
Template Known Secondary structure |   |
G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |
|
|
| S | S |
|
|
|
|
|
|
| T | T | T | T |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | S | S |
|
|
|  |  |  |  |  |  |  |  |  | T | T | S |
| S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
229 | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|