Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 75 Aligned Residues 293 % Identity 13% Template c3dfhC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase; PDBTitle: crystal structure of putative mandelate racemase / muconate2 lactonizing enzyme from vibrionales bacterium swat-3 Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q
Query Conservation																																				.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.												.																	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Sequence		I	S	D	I	H	C	I	I	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	R	H	N	L	I	T	V	V	V	E	T	N	E	G	V	T	G	F	G	C	A	T	F	Q	Q	R	.	.	.	.	.	P	L	A	V	K	T	M	V	D	E	Y	L	K	P	I	L	I	G	K	N	A	N	N	I
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S										T	T											T	T		.	.	.	.	.											T						T	T		B	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.														.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		80																			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		E	D	L	W	Q	M	M	M	V	N	A	Y	W	R	N	G	P	V	I	N	N	A	I	S	G	V	D	M	A	L	W	D	I	K	A	K	L	A	G	M	P	L	H	Q	L	F	G	G	K	S	R	D	A	I	P	V	Y	T	H	A	T	S	D	T	M	E	G	I	Y	D	L	V	E	G	F	L	E	K	G	Y
Template Known Secondary structure											T	T	S	S			S																						T	T	S	B						T			S	S	S											S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.
Predicted Secondary structure												.	.	.															.																																												.	.
Query SS confidence												.	.	.															.																																												.	.
Query Sequence		K	V	A	K	V	K	V	G	L	Y	.	.	.	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A
Query Conservation												.	.	.															.																																												.	.
Alig confidence												.	.	.															.																															.	.	.											.	.
Template Conservation																																																												.	.	.
Template Sequence		K	H	I	R	C	Q	L	G	F	D	Q	D	Q	Y	M	D	N	T	L	T	M	F	K	S	L	R	E	K	Y	G	N	Q	F	H	I	L	H	D	V	H	E	R	L	F	P	N	Q	A	I	Q	F	A	K	E	V	E	Q	Y	.	.	.	K	P	Y	F	I	E	D	I	L	P	P	N	Q	T	E	W	L	D	N
Template Known Secondary structure																															T	T	S	S							T	T		S													G	G	G	.	.	.			S						S		T	T		G	G	G
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																																													.
Query SS confidence																							.	.																																													.
Query Sequence		F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	.	S	S	L	G	L	T	Q	L	A	R	I	A
Query Conservation																							.	.																																													.
Alig confidence																							.	.																																													.
Template Conservation
Template Sequence		I	R	S	Q	S	S	V	S	L	G	L	G	E	L	F	N	N	P	E	E	W	K	S	L	I	A	N	R	R	I	D	F	I	R	C	H	V	S	Q	I	G	G	I	T	P	A	L	K	L	G	H	L	C	Q	N	F	G	V	R	I	A	W	H	C	P	P	D	M	T	P	I	G	A	A	V	N	T	H	L	N
Template Known Secondary structure				T	T									T	T			S										T	T			S						T	T	T	T	T	S															T									T	T
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	L	T	P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	L	H	N	A	A	I	Q	E	H	V	E	Y	N	G	N	T	H	K	V	F	P	N	A	A	E	P	I	N	G	Y	L	Y	A	S
Template Known Secondary structure				S	T	T	B																S	T	T					B	T	T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions