Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 74 Aligned Residues 293 % Identity 19% Template c3ddmD_ PDB info PDB header:lyase Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50 Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																		.																																															.
Query SS confidence																																		.																																															.
Query Sequence		S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	.
Query Conservation																																		.																																															.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.											.																				.	.																										.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Sequence		R	V	R	A	H	V	F	R	Y	P	V	.	.	.	.	.	.	.	.	.	.	.	H	D	R	P	A	V	L	V	E	V	E	D	S	D	G	A	V	G	W	G	E	V	W	C	N	F	P	A	C	G	.	.	A	E	H	R	A	R	L	V	E	T	V	L	A	P	L	L	T	A	R	A	F	A	D	P	A	Q
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.													T	T	S											S	S	T	T		.	.											T						T	T	S		B	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.																															.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.												.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
																								81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	M	P	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																																																.
Template Sequence		A	F	A	H	L	E	A	R	T	A	V	L	A	I	Q	T	G	E	P	G	P	L	A	Q	A	I	A	G	L	D	I	A	L	C	D	L	A	A	R	R	A	G	Q	P	L	W	A	W	L	G	G	S	G	D	R	I	G	V	Y	A	S	G	I	N	P	E	N	P	E	D	V	V	A	R	K	A	A	E	.	G
Template Known Secondary structure									T	T								T																									T		B					T	T		S													S	S													.	T
Template Predicted Secondary structure																																																																																.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.
Predicted Secondary structure																											.																																													.	.	.
Query SS confidence																											.																																													.	.	.
Query Sequence		E	K	V	A	K	V	K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	T	.	.	.	R	D	D	S	R	A	F
Query Conservation																											.																																													.	.	.
Alig confidence											.																.																															.	.	.												.	.	.
Template Conservation											.																																															.	.	.
Template Sequence		Y	R	A	F	K	L	K	V	G	.	F	D	D	A	R	D	V	R	N	A	L	H	V	R	E	L	L	G	A	A	T	P	L	M	A	D	A	N	Q	G	W	D	L	P	R	A	R	Q	M	A	Q	R	L	G	P	A	.	.	.	Q	L	D	W	L	E	E	P	L	R	A	D	R	P	A	A	E	W	A	E	L
Template Known Secondary structure										S	.	S																		S	S	S							T	T															G	G	G	.	.	.									S		T	T	S
Template Predicted Secondary structure											.																																															.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	F	.	.	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W
Query Conservation																							.	.
Alig confidence																							.	.																																				.
Template Conservation																																																												.
Template Sequence		A	Q	A	A	P	M	P	L	A	G	G	E	N	I	A	G	V	A	A	F	E	T	A	L	A	A	R	S	L	R	V	M	Q	P	D	L	A	K	W	G	G	F	S	G	C	L	P	V	A	R	A	V	V	A	A	G	L	R	.	Y	C	P	H	Y	L	G	A	G	I	G	L	Q	A	S	A	H	L	L	A	A
Template Known Secondary structure						S	S						T	T			S											T									T	T	T	T	T															T	T			.							S
Template Predicted Secondary structure																																																												.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		281	.	.	.	.	.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		L	T	P	D	T	I	P	G	L	D	T	.	.	.	.	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.
Template Conservation
Template Sequence		V	P	G	L	A	S	P	G	L	L	G	V	D	A	N	D	N	P	L	R	S	L	L	S	P	A	L	A	T	L	H	E	G	R	I	T	L	G
Template Known Secondary structure		S			S	S	S									S							T	S		G	G	G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions