Phyre 2 alignment of P29208 with c3cxoA

Job Description P29208
Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012

Rank 96 Aligned Residues 297

% Identity 16% Template c3cxoA_

PDB info PDB header:lyase Chain: A: PDB Molecule:putative galactonate dehydratase; PDBTitle: crystal structure of l-rhamnonate dehydratase from2 salmonella typhimurium complexed with mg and 3-deoxy-l-3 rhamnonate

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.													.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																		.															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A
Query Conservation																		.															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.												.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.
Template Sequence	R	Q	S	F	G	.	I	N	V	L	G	T	L	I	V	E	V	E	A	E	N	R	Q	T	G	F	A	V	S	T	A	G	E	M	G	C	F	I	V	E	K	H	L	N	R	F	I	E	G	K	C	V	S	D	I	K	L	I	H	D	Q	M	L	G	A	T	M	Y	Y	S	G	S	G	G	L	V	M	N	T	I
Template Known Secondary structure	T	G	G	G	T	.	T	T	S	S										T	T	S																				T	T					T	T	S	B	T	T														T	T	T	S	T	T	S	T
Template Predicted Secondary structure						.
Template SS confidence
	59	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.
Predicted Secondary structure																																			.	.	.	.	.																			.	.	.	.	.	.																.
Query SS confidence																																			.	.	.	.	.																			.	.	.	.	.	.																.
Query Sequence	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	L	C	N	G	D	P	D	D	L	I	.	.	.	.	.	L	K	L	A	D	M	P	G	E	K	V	A	K	V	K	V	G	L	.	.	.	.	.	.	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A
Query Conservation																																			.	.	.	.	.																			.	.	.	.	.	.																.
Alig confidence																																			.	.	.	.	.																			.	.	.	.	.	.																.
Template Conservation
Template Sequence	S	C	V	D	L	A	L	W	D	L	F	G	K	V	V	G	L	P	V	Y	K	L	L	G	G	A	V	R	D	E	I	Q	F	Y	A	T	G	A	R	P	D	L	A	K	E	M	G	F	I	G	G	K	M	P	T	H	W	G	P	H	D	G	D	A	G	I	R	K	D	A	A	M	V	A	D	M	R	E	K	C
Template Known Secondary structure																T		B					T	T			S	S	S								S	S									T		S										G	G	G
Template Predicted Secondary structure
Template SS confidence
	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.
Predicted Secondary structure																																											.	.												.	.																			.
Query SS confidence																																											.	.												.	.																			.
Query Sequence	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	.	.	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	F	.	V	A	E	E
Query Conservation																																											.	.												.	.																			.
Alig confidence																														.	.	.											.	.												.	.																			.
Template Conservation																														.	.	.
Template Sequence	G	P	D	F	W	L	M	L	D	C	W	M	S	Q	D	V	N	Y	A	T	K	L	A	H	A	C	A	P	F	.	.	.	N	L	K	W	I	E	E	C	L	P	P	Q	Q	Y	E	G	Y	R	E	L	K	R	N	A	P	A	G	M	M	V	T	S	G	E	H	H	G	T	L	Q	S	F	R	T	L	A	E	T
Template Known Secondary structure		S	S	S							T	T															G	G	G	.	.	.	T								S		T	T												S		T	T							T	T			S									T	T
Template Predicted Secondary structure																														.	.	.
Template SS confidence
	218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	.	P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence	G	I	D	I	M	Q	P	D	V	G	W	C	G	G	L	T	T	L	V	E	I	A	A	L	A	K	S	R	G	Q	L	V	V	P	H	G	S	S	V	Y	S	H	H	A	V	I	T	F	T	N	T	P	F	S	E	F	L	M	T	S	P	D	C	S	T	L	R	P	Q	F	D	P	I	L	L	D	E	P	V	P
Template Known Secondary structure	T		S						T	T	T	T	T																T							S										T	T		T	T			S							S	T	T	S		S				T	T	T	T	T			T
Template Predicted Secondary structure
Template SS confidence
	295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

	307	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	L	P	V	V	E	V	D	A	L	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	N	G	R	I	H	K	S	V	L	D	K
Template Known Secondary structure	B	T	T				G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
	375	.	.	.	.	380	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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