Job Description P29208 Confidence 84.29% Date Thu Jan 5 11:45:36 GMT 2012 Rank 169 Aligned Residues 126 % Identity 17% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.																.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence																	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V	K	V	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	A	I	P	D	.	.	.	L	H	L	R	L	D	A	N	R	A	W	T	P
Query Conservation																	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Alig confidence																	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y
Template Known Secondary structure					S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.															.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	E	P	C	K	T	R	D	D	S	R	A	F	A	R	E	T	.	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	F	V	A	E	E	G	V	R	A	V	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	R	V	D	G	V	X
Template Known Secondary structure														T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		234
Predicted Secondary structure
Query SS confidence
Query Sequence		I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		224

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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