Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 14 Aligned Residues 307 % Identity 20% Template c2zc8B_ PDB info PDB header:metal binding protein Chain: B: PDB Molecule:n-acylamino acid racemase; PDBTitle: crystal structure of n-acylamino acid racemase from thermus2 thermophilus hb8 Resolution 1.95 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.																														.	.
Query SS confidence																																																	.	.																														.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	R	E	G	E	R	E	G	W	G	E	I	S	P	.	.	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	.	.
Query Conservation																																																	.	.																														.	.
Alig confidence																																																	.	.																														.	.
Template Conservation
Template Sequence		I	E	A	A	E	L	R	I	L	E	L	P	L	K	F	R	F	E	T	S	F	G	V	Q	T	K	R	T	I	L	L	L	R	L	F	G	E	G	L	E	G	L	G	E	G	V	M	E	R	L	P	L	Y	R	E	E	T	V	A	G	A	R	Y	L	L	E	E	V	F	L	P	R	V	L	G	R	D	L	P	N
Template Known Secondary structure																					T	T																T	T										B	S	S		S	S	S	S		B											T						T	T		B			S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
												77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V
Query Conservation		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		P	E	A	L	R	E	A	L	A	P	F	R	G	N	P	M	A	K	A	V	L	E	M	A	F	F	D	L	W	A	K	A	L	G	R	P	L	W	Q	V	L	G	G	V	R	Q	A	V	E	V	G	V	S	L	G	I	Q	P	S	V	E	D	T	L	R	V	V	E	R	H	L	E	E	G	Y	R	R	I	K	L
Template Known Secondary structure										T	T	S		S																					T	S	B						T				S				B								S	S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I
Query Conservation																																																																.	.
Alig confidence						.	.	.																																				.							.	.	.											.	.
Template Conservation						.	.	.																																				.							.	.	.
Template Sequence		K	I	K	P	.	.	.	G	W	D	Y	E	V	L	K	A	V	R	E	A	F	P	E	A	T	L	T	A	D	A	N	S	A	Y	S	L	A	N	L	A	Q	L	.	K	R	L	D	E	L	.	.	.	R	L	D	Y	I	E	Q	P	L	A	Y	D	D	L	L	D	H	A	K	L	Q	R	E	L	S	T	P	I
Template Known Secondary structure				B	T	.	.	.	T	B	S												T	T	S							T	T				G	G	G					.			G	G	G	G	.	.	.	T		S						S		T	T		S											S	S
Template Predicted Secondary structure						.	.	.																																				.							.	.	.
Template SS confidence
		163	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		C	L	D	E	S	L	T	G	A	E	K	A	R	K	A	I	E	L	G	A	G	R	V	F	N	V	K	P	A	R	L	G	G	H	G	E	S	L	R	V	H	A	L	A	E	S	A	G	I	P	L	W	M	G	G	M	L	E	A	G	V	G	R	A	H	N	L	H	L	A	T	L	P	G	F	T	K	P	G	D
Template Known Secondary structure				S	T	T			S											T			S										T	S														T	T																						T	T	S	T	T	B		S		B	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		289	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		L	D	.	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		V	S	S	A	S	R	Y	W	E	E	D	I	V	E	E	A	L	E	A	K	D	G	L	M	P	V	P
Template Known Secondary structure					G	G	G	T		S	S		S	B	S	S					B	T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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