Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 85 Aligned Residues 296 % Identity 18% Template c2qq6B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:mandelate racemase/muconate lactonizing enzyme- PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme-like protein from rubrobacter3 xylanophilus dsm 9941 Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.															.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	R	E	G	E	R	E	G	W	G	E	I	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	R	V	E	T	A	A	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	G	P	S	V	L	V	R	V	W	A	G	D	E	H	G	L	G	E	C	Y	P	S	A	P	A	A	G	I	H	H	I	V	X	N	X	E	E	Q	L	L	G	E	D	P	R	D	V	E	R	L	Y	E	K	X
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S										T	T											S												T	G	G	G	T	T	T			T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.															.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																														.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	L	C	N	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	D	L
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	W	N	I	F	T	G	G	Q	A	G	A	V	I	T	A	L	S	G	I	E	T	A	L	W	D	L	A	G	K	L	Q	G	V	P	V	Y	R	L	L	G	G	A	F	R	R	R	V	R	L	Y	A	D	C	N	A	G	T	V	D	A	A	A	H	H	I	E	G	G	L	F	E	E	G	S	N	E	E	Y
Template Known Secondary structure					T	T	T	T	T	T	T	S	S																						T	S		G	G	G	T	T	T			S		S								T	T	G	G	G			T	T	S				T	T		S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		118	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.																	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V	K	V	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V
Query Conservation								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		I	A	V	A	R	E	A	V	E	R	G	F	D	A	I	K	L	D	V	D	D	I	T	G	P	L	H	R	D	F	W	N	G	A	I	S	P	R	E	H	E	A	X	V	A	R	V	A	A	V	R	E	A	V	G	P	E	V	E	V	A	I	D	X	H	G	R	F	D	I	P	S	S	I	R	F	A	R	A	X
Template Known Secondary structure											T	T		S									T	T	S	T	T		S		S	S	S																								S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																		.	.																													.	.
Query SS confidence																		.	.																													.	.
Query Sequence		N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A
Query Conservation																		.	.																													.	.
Alig confidence					.	.	.											.	.																													.	.
Template Conservation					.	.	.
Template Sequence		E	P	F	.	.	.	G	L	L	W	L	E	E	P	T	P	P	E	N	L	D	A	L	A	E	V	R	R	S	T	S	T	P	I	C	A	G	E	N	V	Y	T	R	F	D	F	R	E	L	F	A	K	R	A	V	D	Y	V	X	P	D	V	A	K	C	G	G	L	A	E	A	K	R	I	A	N	L	A	E	L
Template Known Secondary structure		G	G	G	.	.	.	T		S						S		S	S										T	T		S	S						T	T														T			S										T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		232	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D	T	L	.	.	.	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation																																								.	.	.
Alig confidence							.																																	.	.	.
Template Conservation							.
Template Sequence		D	Y	I	P	F	.	A	P	H	N	V	S	S	P	V	G	T	V	A	A	A	H	V	C	A	A	V	S	N	F	A	V	L	E	W	H	A	I	D	X	P	H	W	E	D	F	V	R	Y	P	G	G	P	V	I	R	E	G	H	I	E	L	T
Template Known Secondary structure		T	T			B	.																				S		T	T	B								T	T		T	T	S	G	G	G				S	S	S		S	B		S	S
Template Predicted Secondary structure							.
Template SS confidence
		309	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions