Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 80 Aligned Residues 294 % Identity 14% Template c2qjjC_ PDB info PDB header:lyase Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of d-mannonate dehydratase from novosphingobium2 aromaticivorans Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																	.																																															.	.
Query SS confidence																																	.																																															.	.
Query Sequence		A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	.	.
Query Conservation																																	.																																															.	.
Alig confidence															.	.	.	.	.	.	.	.	.										.																	.	.	.	.	.																										.	.
Template Conservation															.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Sequence		M	K	I	T	A	A	R	V	I	I	T	C	P	.	.	.	.	.	.	.	.	.	G	R	N	F	V	T	L	K	I	E	T	D	Q	G	V	Y	G	I	G	D	A	T	L	N	G	R	.	.	.	.	.	E	L	S	V	V	A	Y	L	Q	E	H	V	A	P	C	L	I	G	M	D	P	R	R	I	E	D	I
Template Known Secondary structure														S	.	.	.	.	.	.	.	.	.	S	S										T	T	S										T	T		.	.	.	.	.											T						T	T	S		T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.										.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
																		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		W	Q	Y	V	Y	R	G	A	Y	W	R	R	G	P	V	T	M	R	A	I	A	A	V	D	M	A	L	W	D	I	K	A	K	M	A	G	M	P	L	Y	Q	L	L	G	G	R	S	R	D	G	I	M	V	Y	G	H	A	N	G	S	D	I	A	E	T	V	E	A	V	G	H	Y	I	D	M	G	Y	K	A	I
Template Known Secondary structure									T	S	S																										T	S	B						T			S		S	S										S	S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		131	.	.	.	.	.	.															.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																																												.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																																												.
Query Sequence		K	V	K	V	G	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																																												.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																															.	.	.											.
Template Conservation																																																																				.	.	.
Template Sequence		R	A	Q	T	G	V	P	G	I	S	L	P	S	V	T	G	W	D	T	R	K	A	L	N	Y	V	P	K	L	F	E	E	L	R	K	T	Y	G	F	D	H	H	L	L	H	D	G	H	H	R	Y	T	P	Q	E	A	A	N	L	G	K	M	L	E	P	Y	.	.	.	Q	L	F	W	L	E	D	C	T	P	A
Template Known Secondary structure								T	T																T	T														S	S	S							T	T		S													G	G	G	.	.	.			S				S		S
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.
			195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270
Predicted Secondary structure		.																														.	.																																							.
Query SS confidence		.																														.	.																																							.
Query Sequence		.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	F	.	.	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	.	S	S	S	I	E	S	S	L	G
Query Conservation		.																														.	.																																							.
Alig confidence		.																														.	.																																							.
Template Conservation
Template Sequence		E	N	Q	E	A	F	R	L	V	R	Q	H	T	V	T	P	L	A	V	G	E	I	F	N	T	I	W	D	A	K	D	L	I	Q	N	Q	L	I	D	Y	I	R	A	T	V	V	G	A	G	G	L	T	H	L	R	R	I	A	D	L	A	S	L	Y	Q	V	R	T	G	C	H	G	A	T	D	L	S	P	V	T
Template Known Secondary structure		S	S	G	G	G	G									S						T	T			S	G	G	G	T						T	T			S						T	T	T	T	T															T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	G	C	A	L	H	F	D	T	W	V	P	N	F	G	I	Q	E	Y	M	R	H	T	E	E	T	D	A	V	F	P	H	D	Y	W	F	E	K	G	E	L	F	V	G
Template Known Secondary structure													T	T	B																S		B	S					T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions