Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 56 Aligned Residues 305 % Identity 16% Template c2ppgB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:putative isomerase; PDBTitle: crystal structure of putative isomerase from sinorhizobium meliloti Resolution 2.49 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.																.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	.	.	.	.	.	.	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	F	S	Q	E	T	W	E	E
Query Conservation																												.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	K	I	E	S	F	T	L	T	L	P	R	P	N	G	R	G	Y	L	V	R	K	A	N	R	T	V	Y	P	T	F	D	R	S	V	L	V	R	I	E	T	E	N	G	A	V	G	W	G	E	T	Y	G	L	V	A	P	R	A	T	X	E	I	I	D	D	L	L	A	D	F	T	I	G	R	D	P	F	D
Template Known Secondary structure																	T	T	S					T	T	T	T					S												T	T											S	S												T	T	G	G	G	T	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.														.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		A	A	A	I	H	D	D	L	Y	D	L	X	R	V	R	G	Y	T	G	G	F	Y	V	D	A	L	A	A	I	D	I	A	L	W	D	L	A	G	K	L	A	G	L	P	V	C	K	L	L	G	G	Q	R	R	D	R	I	A	A	Y	I	S	G	L	P	E	D	T	R	A	K	R	A	E	L	A	A	A	W	Q
Template Known Secondary structure												T	T	G	G	G	T		S	S																							T	S	B	G	G	G	G	T	T					S												S	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		M	P	G	E	K	V	A	K	V	K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A
Query Conservation																																																																									.	.
Alig confidence																							.	.	.	.	.																																	.	.	.											.	.
Template Conservation																							.	.	.	.	.																																	.	.	.
Template Sequence		A	K	G	F	S	S	F	K	F	A	S	P	V	A	K	E	X	E	I	L	R	.	.	.	.	.	E	R	L	G	P	A	V	R	I	A	C	D	X	H	W	A	H	T	A	S	E	A	V	A	L	I	K	A	X	E	P	H	.	.	.	G	L	W	F	A	E	A	P	V	R	T	E	D	I	D	G	L	A	R
Template Known Secondary structure		T	T	T																			.	.	.	.	.					S	S	S								S															G	G	G	.	.	.									S		T	T
Template Predicted Secondary structure																							.	.	.	.	.																																	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A
Query Conservation																							.	.
Alig confidence																							.	.																	.
Template Conservation																																									.
Template Sequence		V	A	A	S	V	S	T	A	I	A	V	G	E	E	W	R	T	V	H	D	X	V	P	R	V	A	R	R	A	L	A	I	V	Q	P	E	X	G	H	.	K	G	I	T	Q	F	X	R	I	G	A	Y	A	H	V	H	H	I	K	V	I	P	H	A	T	I	G	A	G	I	F	L	A	A	S	L	Q	A	S	A
Template Known Secondary structure				T	T		S	S						T	T			S	G	G	G	T						T	T			S									.																T	T									S	S		S
Template Predicted Secondary structure																																									.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		W	L	T	P	D	T	I	P	G	L	D	.	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		A	L	A	N	V	D	C	H	E	F	Q	H	S	I	F	E	P	N	R	R	L	L	V	G	D	X	D	C	L	N	G	E	Y	V	V	P
Template Known Secondary structure				T	T	B											T	G	G	G	G	G				S					T	T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions