Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 45 Aligned Residues 302 % Identity 13% Template c2pp1C_ PDB info PDB header:lyase Chain: C: PDB Molecule:l-talarate/galactarate dehydratase; PDBTitle: crystal structure of l-talarate/galactarate dehydratase from2 salmonella typhimurium lt2 liganded with mg and l-lyxarohydroxamate Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20							.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																						.	.	.	.	.	.															.																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.															.																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	.	.	.	.	.	.	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.															.																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.															.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	W	V	K	L	S	L	A	F	L	P	L	A	T	P	V	S	D	A	K	V	L	T	G	R	Q	K	P	L	T	E	V	A	I	I	I	A	E	I	R	S	R	D	G	F	E	G	V	G	F	S	Y	S	K	R	A	G	G	Q	G	I	Y	A	H	A	K	E	I	A	D	N	L	L	G	E	D	P	N	D
Template Known Secondary structure																									T	T	S	S																T	T	S										S	S	T	T												G	G	G	G	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
					63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.															.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure		.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.
Query Conservation		.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		I	D	K	I	Y	T	K	L	L	W	A	G	A	S	V	G	R	S	G	M	A	V	Q	A	I	S	P	I	D	I	A	L	W	D	M	K	A	K	R	A	G	L	P	L	A	K	L	L	G	A	H	R	D	S	V	Q	C	Y	N	T	S	G	G	F	L	H	T	P	L	D	Q	V	L	K	N	V	V	I	S	R
Template Known Secondary structure													T	G	G	G		S	S	T																					T	T	S	B								S		S								T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200
Predicted Secondary structure																														.																																												.	.
Query SS confidence																														.																																												.	.
Query Sequence		M	P	G	E	K	V	A	K	V	K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R
Query Conservation																														.																																												.	.
Alig confidence																														.																															.	.	.											.	.
Template Conservation																																																													.	.	.
Template Sequence		E	N	G	I	G	G	I	K	L	K	V	G	Q	P	N	C	A	E	D	I	R	R	L	T	A	V	R	E	A	L	G	D	E	F	P	L	M	V	D	A	N	Q	Q	W	D	R	E	T	A	I	R	M	G	R	K	M	E	Q	F	.	.	.	N	L	I	W	I	E	E	P	L	D	A	Y	D	I	E	G	H	A
Template Known Secondary structure			T	T											S																		S	S	S							T	T															G	G	G	.	.	.			S						S		T	T
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A
Query Conservation																								.	.
Alig confidence																								.	.																																											.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.
Template Sequence		Q	L	A	A	A	L	D	T	P	I	A	T	G	E	M	L	T	S	F	R	E	H	E	Q	L	I	L	G	N	A	S	D	F	V	Q	P	D	A	P	R	V	G	G	I	S	P	F	L	K	I	M	D	L	A	A	K	H	G	R	K	L	A	P	H	F	A	.	.	.	.	.	.	M	E	V	H	L	H	L	S
Template Known Secondary structure								S	S						T	T			S										T	T			S										T	S														T	T							S		.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330							.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	L	T	P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		A	A	Y	P	L	E	P	W	L	E	.	.	.	H	F	E	W	L	N	P	L	F	N	E	Q	L	E	L	R	D	G	R	M	W	I	S
Template Known Secondary structure			T		S	S						.	.	.			S	T	T	G	G	G	B	S							T	T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.				.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions