Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 79 Aligned Residues 297 % Identity 15% Template c2pozA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative dehydratase; PDBTitle: crystal structure of a putative dehydratase from mesorhizobium loti Resolution 2.04 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure																																				.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.						.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	G	V	N	I	Y	L	L	K	S	G	R	L	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	V	E	I	S	T	D	E	G	I	T	G	A	G	E	A	G	I	A	Y	G	V	G	G	T	A	A	A	G	X	I	K	D	L	S	E	R	F	L	I	G	K	D	P	S	R	I	E	E	L
Template Known Secondary structure												B	T	T	B			.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S								S		S	S	S	S																	T	T	T			T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20														.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
			64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.
Predicted Secondary structure		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P
Query Conservation		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		W	S	T	X	Y	D	H	S	F	W	A	K	N	G	G	A	I	I	F	A	G	I	S	A	I	E	Q	A	L	W	D	I	K	G	K	C	L	G	V	P	V	Y	E	L	F	G	G	K	I	R	D	R	V	R	A	Y	A	N	G	W	Y	G	A	A	D	T	P	D	E	F	A	R	A	V	E	R	P	L	K	E
Template Known Secondary structure									S	S	T	T	T	T																									T	S	B					T	T			S		S								S			T	T			S								T						T
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		126	.	.	.	130	.	.	.	.	.	.	.																		.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence		G	E	K	V	A	K	V	K	V	G	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																															.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		G	Y	G	A	L	K	F	Y	P	L	A	Q	R	V	G	S	A	L	Q	H	V	T	R	R	S	X	S	A	E	A	I	E	L	A	Y	R	R	V	K	A	V	R	D	A	A	G	P	E	I	E	L	X	V	D	L	S	G	G	L	T	T	D	E	T	I	R	F	C	R	K	I	G	E	L	.	.	.	D	I	C
Template Known Secondary structure		T		S												T	T						B	T	T	B																						T	T	S							T	T		S													G	G	G	.	.	.
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.
		188	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure									.	.																														.	.
Query SS confidence									.	.																														.	.
Query Sequence		F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	F	.	.	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S
Query Conservation									.	.																														.	.
Alig confidence									.	.																														.	.
Template Conservation
Template Sequence		F	V	E	E	P	C	D	P	F	D	N	G	A	L	K	V	I	S	E	Q	I	P	L	P	I	A	V	G	E	R	V	Y	T	R	F	G	F	R	K	I	F	E	L	Q	A	C	G	I	I	Q	P	D	I	G	T	A	G	G	L	X	E	T	K	K	I	C	A	X	A	E	A	Y	N	X	R	V	A	P	H	V
Template Known Secondary structure							S		T	T													S	S						T	T												T	T	T			S						T	T	T	S	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	.	.	.	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation																									.	.	.
Alig confidence			.																						.	.	.
Template Conservation			.
Template Sequence		C	.	G	S	S	L	I	E	T	A	T	L	Q	L	E	A	N	I	T	N	F	X	I	H	E	H	Y	P	A	F	K	A	D	D	G	Y	V	E	V	L	E	N	P	P	S	I	S	S	G	Y	F	E	X	P
Template Known Secondary structure			.	S	S															T	T	B							G	G	G	G	G	S	T	T					B	S	S						T	T
Template Predicted Secondary structure			.
Template SS confidence
		309		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions