Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 21 Aligned Residues 310 % Identity 17% Template c2pmqA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of a mandelate racemase/muconate lactonizing enzyme2 from roseovarius sp. htcc2601 Resolution 1.72 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure															.																						.															.																													.
Query SS confidence															.																						.															.																													.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	.	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	.	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	.
Query Conservation															.																						.															.																													.
Alig confidence															.																						.															.																													.
Template Conservation
Template Sequence		I	A	E	I	Q	L	F	Q	H	D	L	P	V	V	N	G	P	Y	R	I	A	S	G	D	V	W	S	L	T	T	T	I	V	K	I	I	A	E	D	G	T	I	G	W	G	E	T	C	P	V	G	P	T	Y	A	E	A	H	A	G	G	A	L	A	A	L	E	V	L	A	S	G	L	A	G	A	E	A	L	P
Template Known Secondary structure															T	T			B			T	T			B	S												T	T	S										S	S	S	S	S	S	S																T	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
												77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.													.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V
Query Conservation		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		L	P	L	H	T	R	X	D	S	L	L	C	G	H	N	Y	A	K	S	A	L	D	I	A	V	H	D	L	W	G	K	R	L	G	V	P	V	H	E	L	L	G	G	A	L	T	D	S	V	S	S	Y	Y	S	L	G	V	X	E	P	D	E	A	A	R	Q	A	L	E	K	Q	R	E	G	Y	S	R	L	Q	V
Template Known Secondary structure													S																						T		B					T	T			S		S										S																	T		S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	A	I	.	.	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I
Query Conservation																							.	.
Alig confidence																							.	.																													.	.	.			.
Template Conservation																																																					.	.	.			.
Template Sequence		K	L	G	A	R	P	I	E	I	D	I	E	A	I	R	K	V	W	E	A	V	R	G	T	G	I	A	L	A	A	D	G	N	R	G	W	T	T	R	D	A	L	R	F	S	R	E	C	P	D	I	.	.	.	P	F	.	V	X	E	Q	P	C	N	S	F	E	D	L	E	A	I	R	P	L	C	H	H	A	L
Template Known Secondary structure					S	S																	T	T	S									T	T															T	T	S	.	.	.			.				S		S	S	S								G	G	G			S
Template Predicted Secondary structure																																																					.	.	.			.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.
Predicted Secondary structure															.	.																																																														.	.
Query SS confidence															.	.																																																														.	.
Query Sequence		A	W	D	E	S	L	R	E	P	D	F	A	F	.	.	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	.	.	T	I
Query Conservation															.	.																																																														.	.
Alig confidence															.	.																																																														.	.
Template Conservation
Template Sequence		Y	X	D	E	D	G	T	S	L	N	T	V	I	T	A	A	A	T	S	L	V	D	G	F	G	X	K	V	S	R	I	G	G	L	Q	H	X	R	A	F	R	D	F	C	A	A	R	N	L	P	H	T	C	D	D	A	W	G	G	D	I	V	S	A	A	C	T	H	I	A	S	T	V	L	P	R	L	X	E	G
Template Known Secondary structure				S	T	T			S										T	T			S					B					T	S															T						B		S	S		S												T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	W	L	A	Q	P	Y	V	A	E	H	Y	D	A	E	N	G	V	R	I	E	G	G	R	I	R	V	P
Template Known Secondary structure					S	G	G	G		S			S	S	T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions