Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 51 Aligned Residues 301 % Identity 17% Template c2oz8B_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mll7089 protein; PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti Resolution 2.48 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																				.																																											.	.	.
Query SS confidence																																				.																																											.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	.	.	.
Query Conservation																																				.																																											.	.	.
Alig confidence																																				.																	.																										.	.	.
Template Conservation																																																					.
Template Sequence		L	S	H	F	R	I	T	R	F	Q	F	A	R	D	R	V	I	G	D	S	Q	V	R	A	D	D	V	N	V	A	A	L	E	L	V	S	E	S	G	E	V	G	L	G	F	I	Q	T	L	F	N	.	P	L	P	D	Q	Q	E	I	E	S	V	F	E	H	E	V	W	P	S	L	K	G	N	R	A	I	A	L
Template Known Secondary structure																					S	S																T	T	S										S	S	S	.																T					T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
								77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.														.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V	K	V	G
Query Conservation		.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		V	H	R	V	N	R	P	R	Y	S	L	P	F	H	E	A	V	Q	V	A	L	W	D	L	A	A	K	E	A	G	L	P	L	H	V	L	L	G	S	R	R	N	R	V	K	A	Y	A	S	G	L	D	F	H	L	D	D	D	A	F	V	S	L	F	S	H	A	A	S	I	G	Y	S	A	F	K	I	K	V	G
Template Known Secondary structure		T	T									S	S																	T	T		B					T	T		S		S										B	T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																		.																																												.	.
Query SS confidence																		.																																												.	.
Query Sequence		L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W
Query Conservation																		.																																												.	.
Alig confidence																		.																																	.											.	.
Template Conservation																																																			.
Template Sequence		H	R	D	F	D	R	D	L	R	R	L	E	L	L	K	T	C	V	P	A	G	S	K	V	M	I	D	P	N	E	A	W	T	S	K	E	A	L	T	K	L	V	A	I	R	E	A	G	H	.	D	L	L	W	V	E	D	P	I	L	R	H	D	H	D	G	L	R	T	L	R	H	A	V	T	W	T	Q	I	N
Template Known Secondary structure			S	S														T	S		T	T								T	T		B															T	T		.							S		B		T	T														S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D
Query Conservation												.	.
Alig confidence												.	.														.	.	.	.																											.	.	.	.	.
Template Conservation																											.	.	.	.																											.	.	.	.	.
Template Sequence		S	G	E	Y	L	D	L	Q	G	K	R	L	L	L	E	A	H	A	A	D	I	L	N	V	H	.	.	.	.	G	Q	V	T	D	V	M	R	I	G	W	L	A	A	E	L	G	I	P	I	S	I	G	N	T	F	.	.	.	.	.	L	E	A	G	V	H	M	A	V	A	L	P	E	V	E	W	L	E	Y	S
Template Known Secondary structure				T	T												T	T			S						.	.	.	.	S																T									G	.	.	.	.	.	G	G	T	T								T	T
Template Predicted Secondary structure																											.	.	.	.																											.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.					.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		F	Q	N	F	.	.	D	H	L	V	E	Q	P	I	E	I	R	D	G	Y	A	Y	A	P
Template Known Secondary structure				T	T	.	.	G	G	G	B	S	S						T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		318	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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