Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 43 Aligned Residues 302 % Identity 15% Template c2oqhD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:putative isomerase; PDBTitle: crystal structure of an isomerase from streptomyces coelicolor a3(2) Resolution 1.98 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.												.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	.	.	.	.	.	.	.	.	.	.	.	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N
Query Conservation																																				.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.
Template Sequence		I	T	D	V	D	V	W	V	V	N	L	P	L	V	N	P	F	E	T	K	T	G	.	.	.	.	E	T	R	T	V	V	R	V	R	T	D	S	G	V	E	G	W	G	E	T	X	W	G	A	P	V	A	A	I	V	R	R	X	A	P	D	L	I	G	T	S	P	F	A	L	E	A	F	H	R	K	Q	H	X
Template Known Secondary structure														B										.	.	.	.											T	T	S										S															T	T	S		T	T									T	T	T
Template Predicted Secondary structure																								.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																									.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	L	C	N	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	D	L	I	L	K	L	A	D	M
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.
Template Sequence		V	P	F	F	Y	.	.	.	G	Y	L	G	Y	A	A	I	A	A	V	D	V	A	C	W	D	A	X	G	K	A	T	G	Q	S	V	T	D	L	L	G	G	A	V	R	D	E	V	P	I	T	A	L	I	T	R	A	D	A	P	G	A	T	P	A	D	L	P	K	A	X	A	E	H	A	V	R	V	V	E	E
Template Known Secondary structure							.	.	.																								T		B	T	T	G	G	G	T			S		S										G	G	G	S	T	T			G	G	G
Template Predicted Secondary structure							.	.	.
Template SS confidence
		85	.	.	.	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	E	K	V	A	K	V	K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	T	R	D	D	S	R	A	F	A	R
Query Conservation
Alig confidence													.																																														.	.	.
Template Conservation													.																																														.	.	.
Template Sequence		G	G	F	D	A	V	K	L	K	G	T	.	T	D	C	A	G	D	V	A	I	L	R	A	V	R	E	A	L	P	G	V	N	L	R	V	D	P	N	A	A	W	S	V	P	D	S	V	R	A	G	I	A	L	E	E	L	.	.	.	D	L	E	Y	L	E	D	P	C	V	G	I	E	G	X	A	Q	V	K	A
Template Known Secondary structure					S								.	S																	T	T	S							T	T		S													G	G	G	.	.	.			S						S	S
Template Predicted Secondary structure													.																																														.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T
Query Conservation																				.	.
Alig confidence																				.	.																																																											.
Template Conservation																																																																																.
Template Sequence		K	V	R	I	P	L	C	T	N	X	C	V	V	R	F	E	D	F	A	P	A	X	R	L	N	A	V	D	V	I	H	G	D	V	Y	K	W	G	G	I	A	A	T	K	A	L	A	A	H	C	E	T	F	G	L	G	X	N	L	H	S	G	G	E	L	G	I	A	T	A	A	H	L	A	V	V	S	S	.	T
Template Known Secondary structure					S					S	S	S			S										T	T			S										T	S														T	T								S	S															T	.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	L	S	R	A	I	D	S	X	Y	Y	L	H	A	D	D	I	I	E	P	L	H	L	E	N	G	R	L	R	V	P
Template Known Secondary structure		T	T			S						G	G	G	B		S		S	B							T	T
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions