Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 68 Aligned Residues 294 % Identity 16% Template c2oo6A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:putative l-alanine-dl-glutamate epimerase; PDBTitle: crystal structure of putative l-alanine-dl-glutamate epimerase from2 burkholderia xenovorans strain lb400 Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																				.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.										.														.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		V	V	S	V	D	T	L	C	C	D	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	W	R	N	Y	H	F	V	K	L	T	T	D	E	G	I	V	G	W	S	E	F	D	E	.	.	G	F	G	S	P	G	V	T	A	V	I	E	Q	L	G	K	R	L	V	G	A	S	V	M	E	H	E	R	F	F
Template Known Secondary structure													S	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S										T	T										S	.	.	T	T	T		T	T													T	T	S	B	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.														.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
				68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																											.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	L	C	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	D	D	L	I	L
Query Conservation		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	A	Y	C	L	T	R	P	A	T	G	G	V	V	S	E	G	I	G	A	I	E	N	A	L	L	D	A	K	A	K	T	L	N	V	P	C	Y	E	L	L	G	G	K	L	R	D	R	V	P	V	Y	W	S	H	C	P	T	W	R	I	N	H	P	K	F	F	G	P	P	V	T	D	L	D	G	V	K	R
Template Known Secondary structure								T	G	G	G		S																						T	T	S	B	G	G	G	G	T	T			S		S								S	T	T							T	T	T	S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																										.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		K	L	A	D	.	.	M	P	G	E	K	V	A	K	V	K	V	G	L	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G
Query Conservation						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		T	A	E	E	A	R	E	R	Q	F	R	A	I	K	T	N	I	F	I	H	D	D	G	P	L	H	A	W	R	P	G	F	A	V	P	F	Q	P	A	L	N	V	D	R	K	V	L	R	N	L	R	A	H	L	E	A	L	R	D	G	A	G	P	D	V	E	I	L	L	D	L	N	F	N	A	K	P	E	G	Y
Template Known Secondary structure									T	T												S	S	S	S					B	G	G	G	T	B	S			T	T																								S	S	S							T	T		S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V
Query Conservation																																																					.	.
Alig confidence												.	.	.																																							.	.															.
Template Conservation												.	.	.																																																							.
Template Sequence		L	K	I	L	R	E	L	A	D	F	.	.	.	D	L	F	W	V	E	I	D	S	Y	S	P	Q	G	L	A	Y	V	R	N	H	S	P	H	P	I	S	S	C	E	T	L	F	G	I	R	E	F	K	P	F	F	D	A	N	A	V	D	V	A	I	V	D	T	.	I	W	N	G	V	W	Q	S	M	K	I	A
Template Known Secondary structure								T	T	T	S	.	.	.			S							S											T		S	S						T	T													T	T			S							.
Template Predicted Secondary structure												.	.	.																																																							.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D	T	L	D	L	.	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation																																															.
Alig confidence																	.																														.
Template Conservation																	.
Template Sequence		A	F	A	D	A	H	D	I	N	V	A	P	H	N	F	.	Y	G	H	L	C	T	M	I	N	A	N	F	A	A	A	V	P	N	L	R	I	M	E	T	D	I	D	R	L	A	W	E	D	E	L	F	T	H	A	P	E	Y	Q	N	G	E	L	I	I	P
Template Known Secondary structure							T	T									.	S																S	S	B								S			T	T	T	G	G	G	B	S							T	T
Template Predicted Secondary structure																	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions