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Job DescriptionP29208
Confidence100.00%DateThu Jan 5 11:45:36 GMT 2012
Rank32Aligned Residues296
% Identity17%Templatec2fkpC_
PDB info PDB header:isomeraseChain: C: PDB Molecule:n-acylamino acid racemase; PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCL. REGEREGWGEISPLP. . GFSQETWEEAQSVLLAWVNNWLAG. . . .
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Template Sequence  IEAAEIVVARLPLKTHK. . . . . . . . . . . VVPLLILHGEGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQTFA
Template Known Secondary structure 

B

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BSSSSSSS
BTTT
S
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Query Sequence  . . . . . . . . DCELPQMPSVAFGVSCALAELTDTLPQAANYRAAP. . . . . . . . . . . . LCNGDPDDLILKLAD. . MPGEKVAK
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Template Sequence  NPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVPLCTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIK
Template Known Secondary structure  ST
S

S
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SB



SSTTT
S
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Query Sequence  VKVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKT. . RDDSRAFARETGIA
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Template Sequence  LKIKP. . . GWDVQPVRATREAFPDIRLTVDANSAYTLADAGRL. RQLDEY. . . DLTYIEQPLAWDDLVDHAELARRIRTP
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BT...TBS
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TT


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S
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SS
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Query Sequence  IAWDESLREPDFA. . FVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAWLTPDTIP
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Template Sequence  LCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLSCLSNFRLPG
Template Known Secondary structure  STT

STS
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TTTTTSTT







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Query Sequence  GLD. TLDLMQAQQVRRWPGSTLPVVEVD
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Template Sequence  DTSSASRYWERDLIQEPLEAVDGLMPVP
Template Known Secondary structure  S


GGGTBSS
SBSS



BTT

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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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