Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 63 Aligned Residues 307 % Identity 18% Template c2dw7G_ PDB info PDB header:lyase Chain: G: PDB Molecule:bll6730 protein; PDBTitle: crystal structure of d-tartrate dehydratase from2 bradyrhizobium japonicum complexed with mg++ and meso-3 tartrate Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																				.												.	.	.	.	.														.
Query SS confidence																																				.												.	.	.	.	.														.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	.	.	.	.	.	S	P	L	P	G	F	S	Q	E	T	W	E	E	.	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G
Query Conservation																																				.												.	.	.	.	.														.
Alig confidence																																				.												.	.	.	.	.														.
Template Conservation
Template Sequence		V	R	I	V	D	V	R	E	I	T	K	P	I	S	S	P	I	R	N	A	Y	I	D	F	T	K	M	T	T	S	L	V	A	V	V	T	D	V	V	R	E	G	K	R	V	V	G	Y	G	F	N	S	N	G	R	Y	G	Q	G	G	L	I	R	E	R	F	A	S	R	I	L	E	A	D	P	K	K	L	L	N
Template Known Secondary structure																	S		B		S	S		B		T	T															T	T											T	T	S										T							T	S		G	G	G	S	B
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		74	.	.	.	.	.	80	.																					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																					.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	C	E	L	P	Q	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	L	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	D
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	G	D	N	L	D	P	D	K	V	W	A	A	M	M	I	N	E	K	P	G	G	H	G	E	R	S	V	A	V	G	T	I	D	M	A	V	W	D	A	V	A	K	I	A	G	K	P	L	F	R	L	L	A	E	R	H	G	V	K	A	N	P	R	V	F	V	Y	A	A	G	G	Y	Y	Y	P	G	K	G
Template Known Secondary structure		S	S	S	S	S	B										T	T	T			S	S			S	S																				T	T	S	B										T	S															B		T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		114	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure												.	.																													.
Query SS confidence												.	.																													.
Query Sequence		P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V	K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E
Query Conservation												.	.																													.
Alig confidence												.	.																													.																															.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		L	S	M	L	R	G	E	M	R	G	Y	L	D	R	G	Y	N	V	V	K	M	K	I	G	G	A	P	I	E	E	D	R	M	R	I	E	A	V	L	E	E	I	G	K	D	A	Q	L	A	V	D	A	N	G	R	F	N	L	E	T	G	I	A	Y	A	K	M	L	R	D	Y	.	.	.	P	L	F	W	Y	E
Template Known Secondary structure															T	T		S							S	S	S																	T	T	S								T	T															T	T	S	.	.	.			S
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.
		191	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure						.	.																													.	.								.	.	.	.
Query SS confidence						.	.																													.	.								.	.	.	.
Query Sequence		E	P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	.	.	.	.	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S
Query Conservation						.	.																													.	.								.	.	.	.
Alig confidence						.	.																													.	.								.	.	.	.																														.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		E	V	G	D	P	L	D	Y	A	L	Q	A	A	L	A	E	F	Y	P	G	P	M	A	T	G	E	N	L	F	S	H	Q	D	A	R	N	L	L	R	Y	G	G	M	R	P	D	R	D	W	L	Q	F	D	C	A	L	S	Y	G	L	C	E	Y	Q	R	T	L	E	V	L	K	T	H	G	W	S	.	.	.	P
Template Known Secondary structure				S		T	T									T	T	T			S						T	T			S											S				T	T	T							G	G	G	T	T															T	T			.	.	.	G
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		S	R	C	I	P	H	G	G	H	Q	M	S	L	N	I	A	A	G	L	G	L	G	G	N	E	S	Y	P	D	L	.	F	Q	P	Y	G	G	F	P	D	G	V	R	V	E	N	G	H	I	T	M	P
Template Known Secondary structure		G	G	B			S	S													T		S						S	S	S	.	S	T	T	S	S	S			T	T					S	S
Template Predicted Secondary structure																																.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions