Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 40 Aligned Residues 302 % Identity 12% Template c1mraA_ PDB info PDB header:racemase Chain: A: PDB Molecule:mandelate racemase; PDBTitle: mandelate racemase mutant d270n co-crystallized with (s)-atrolactate Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.															.
Predicted Secondary structure																																				.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation																																				.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	G	L	R	T	R	A	V	N	V	P	L	A	Y	P	V	H	T	A	V	G	T	V	G	T	A	P	L	V	L	I	D	L	A	T	S	A	G	V	V	G	H	S	Y	L	F	A	Y	T	P	V	A	L	K	S	L	K	Q	L	L	D	D	M	A	A	M	I	V	N	E	P	L	A	P	V	S	L	E	A
Template Known Secondary structure															S	S					S	S				S	S											T	T	S										S	S	G	G	G																T	T	S	B	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.												.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		M	L	A	K	R	F	C	L	A	G	Y	T	G	L	I	R	M	A	A	A	G	I	D	M	A	A	W	D	A	L	G	K	V	H	E	T	P	L	V	K	L	L	G	A	N	A	R	P	V	Q	A	Y	D	S	H	S	L	D	G	V	K	L	A	T	E	R	A	V	T	A	A	E	L	G	F	R	A	V	K	T
Template Known Secondary structure							T	T	T	T		S	S																						T	T		B					T	T														S																T	T		S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.																																												.	.
Query SS confidence																					.																																												.	.
Query Sequence		K	V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	.	.	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A
Query Conservation																					.																																												.	.
Alig confidence																					.																															.	.	.											.	.
Template Conservation																																																				.	.	.
Template Sequence		K	I	G	Y	P	A	L	D	Q	D	L	A	V	V	R	S	I	R	Q	A	V	G	D	D	F	G	I	M	V	D	Y	N	Q	S	L	D	V	P	A	A	I	K	R	S	Q	A	L	Q	Q	E	.	.	.	G	V	T	W	I	E	E	P	T	L	Q	H	D	Y	E	G	H	Q	R	I	Q	S	K	L	N	V	P
Template Known Secondary structure						S	S																	S	S	S							T	T		S																.	.	.	T		S						S		T	T											T		S	S
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P
Query Conservation															.	.
Alig confidence															.	.																																															.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.
Template Sequence		V	Q	M	G	E	N	W	L	G	P	E	E	M	F	K	A	L	S	I	G	A	C	R	L	A	M	P	N	A	M	K	I	G	G	V	T	G	W	I	R	A	S	A	L	A	Q	Q	F	G	I	P	M	S	S	H	L	F	Q	E	I	S	.	.	.	.	.	.	A	H	L	L	A	A	T	P	T	A	H	W	L
Template Known Secondary structure						T	T			S										T	T			S					B	T	T	T	T	T																T			B			B	S						.	.	.	.	.	.						T		T	T	B
Template Predicted Secondary structure																																																															.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.							.	.	.	.	.	.	310	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		E	.	.	.	R	L	D	L	A	G	S	V	I	E	P	T	L	T	F	E	G	G	N	A	V	I	P
Template Known Secondary structure			.	.	.				S	S	T	T	T	B				S			S	S	S
Template Predicted Secondary structure			.	.	.
Template SS confidence
		317				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions