Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 95 Aligned Residues 272 % Identity 19% Template c1kkoB_ PDB info PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase Resolution 1.33 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure															.								.																	.	.						.	.	.	.																											.	.	.	.	.
Query SS confidence															.								.																	.	.						.	.	.	.																											.	.	.	.	.
Query Sequence		A	G	V	V	L	R	D	R	R	L	K	T	R	.	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	.	.	F	S	Q	E	T	.	.	.	.	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	Q	M	P	.	.	.	.	.
Query Conservation															.								.																	.	.						.	.	.	.																											.	.	.	.	.
Alig confidence															.								.																	.	.						.	.	.	.																											.	.	.	.	.
Template Conservation
Template Sequence		D	P	V	T	P	G	F	T	S	V	R	Q	A	G	E	C	V	S	V	Q	L	I	L	E	N	G	A	V	A	V	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R	D	P	L	F	L	A	E	H	F	I	P	F	L	N	D	H	I	K	P	L	L	E	G	R	D	V	D	A	F	L	P	N	A	R	F	F
Template Known Secondary structure					S	T	T		S	S	S														T	T	S											T	T	T	T	S	T	T																		T					T	T		B		S		S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
														82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																					.	.	.	.	.	.	.	120	.	.	.				.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	L	C	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	D	D	L	I	L	K	L	A	D	.	.	.	M	P	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		D	K	L	R	I	D	G	N	L	L	H	T	A	V	R	Y	G	L	S	Q	A	L	L	D	A	T	A	L	A	S	G	R	L	K	T	E	V	V	C	D	E	W	Q	L	P	C	V	P	E	A	I	P	L	F	G	Q	S	G	D	D	R	Y	I	A	V	D	K	X	I	L	K	G	V	D	V	L	P	H	A	L
Template Known Secondary structure							T	T																								T												T															T	T		T	T									T	T		S					T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure														.	.	.	.	.	.														.																		.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.														.																		.	.	.	.	.	.
Query Sequence		E	K	V	A	K	V	K	V	G	L	Y	E	.	.	.	.	.	.	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	.	.	.	.	.	.	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C
Query Conservation														.	.	.	.	.	.														.																		.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.														.																		.	.	.	.	.	.
Template Conservation
Template Sequence		I	N	N	V	E	E	K	L	G	F	K	G	E	K	L	R	E	Y	V	R	W	L	S	D	R	I	L	S	L	R	S	S	P	R	Y	H	P	T	L	H	I	D	V	Y	G	T	I	G	L	I	F	D	X	D	P	V	R	C	A	E	Y	I	A	S	L	E	K	E	A	Q	G	L	P	L	Y	I	E	G	P	V
Template Known Secondary structure											T	T	S																			S	S	T	T										T	T						T	T	T												T	T	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		194	.							.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure				.	.	.	.	.	.											.	.	.	.	.																			.	.
Query SS confidence				.	.	.	.	.	.											.	.	.	.	.																			.	.
Query Sequence		K	T	.	.	.	.	.	.	R	D	D	S	R	A	F	A	R	E	.	.	.	.	.	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	F	.	.	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V
Query Conservation				.	.	.	.	.	.											.	.	.	.	.																			.	.
Alig confidence				.	.	.	.	.	.											.	.	.	.	.																			.	.
Template Conservation
Template Sequence		D	A	G	N	K	P	D	Q	I	R	X	L	T	A	I	T	K	E	L	T	R	L	G	S	G	V	K	I	V	A	D	E	W	C	N	T	Y	Q	D	I	V	D	F	T	D	A	G	S	C	H	X	V	Q	I	K	T	P	D	L	G	G	I	H	N	I	V	D	A	V	L	Y	C	N	K	H	G	X	E	A	Y
Template Known Secondary structure				S	S																			T									T	T			S										T	T			S						G	G	G	G	S	S	T													T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		261	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		I	S	S	S	I	.	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		Q	G	G	T	C	N	E	T	E	I	S	A	R	T	C	V	H	V	A	L	A	A	R	P	X	R	X
Template Known Secondary structure						T	T	S																		S
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions