Phyre 2 alignment of P29208 with c1kczA

Job Description P29208
Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012

Rank 92 Aligned Residues 270

% Identity 14% Template c1kczA_

PDB info PDB header:lyase Chain: A: PDB Molecule:beta-methylaspartase; PDBTitle: crystal structure of beta-methylaspartase from clostridium2 tetanomorphum. mg-complex.

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	15	.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure											.											.															.	.								.	.	.	.																								.	.	.	.	.	.	.	.
Query SS confidence											.											.															.	.								.	.	.	.																								.	.	.	.	.	.	.	.
Query Sequence	A	G	V	V	L	R	D	R	R	L	.	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	.	.	P	G	F	S	Q	E	T	.	.	.	.	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	L	P	.	.	.	.	.	.	.	.
Query Conservation											.											.															.	.								.	.	.	.																								.	.	.	.	.	.	.	.
Alig confidence											.											.															.	.								.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	T	V	T	E	G	F	T	Q	V	R	Q	K	G	E	S	I	S	V	L	L	V	L	E	D	G	Q	V	A	H	G	D	C	A	A	V	Q	Y	S	G	A	G	G	R	D	P	L	F	L	A	K	D	F	I	P	V	I	E	K	E	I	A	P	K	L	I	G	R	E	I	T	N	F	K	P	M	A	E	E	F
Template Known Secondary structure				S	T	T		S	S	S														T	T	S											T	T	T	T	S	T	T	S		S															T					T	T		B
Template Predicted Secondary structure
Template SS confidence
	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

						79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																						.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.							.
Predicted Secondary structure	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence	.	.	.	.	.	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	M	P	.	.	.	.	.	.	G
Query Conservation	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence	D	K	M	T	V	N	G	N	R	L	H	T	A	I	R	Y	G	I	T	Q	A	I	L	D	A	V	A	K	T	R	K	V	T	M	A	E	V	I	R	D	E	Y	N	P	G	A	E	I	N	A	V	P	V	F	A	Q	S	G	D	D	R	Y	D	N	V	D	K	M	I	I	K	E	A	D	V	L	P	H	A	L
Template Known Secondary structure						T	T																								T	S											S	T	T													T	T		T	T									T	T		S
Template Predicted Secondary structure
Template SS confidence
	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.

	127	.	.	130	.	.	.	.	.	.	.	.							.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure													.	.	.	.	.	.														.											.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.														.											.	.	.	.	.	.
Query Sequence	E	K	V	A	K	V	K	V	G	L	Y	E	.	.	.	.	.	.	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	.	.	.	.	.	.	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C
Query Conservation													.	.	.	.	.	.														.											.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.														.											.	.	.	.	.	.
Template Conservation
Template Sequence	I	N	N	V	E	E	K	L	G	L	K	G	E	K	L	L	E	Y	V	K	W	L	R	D	R	I	I	K	L	R	V	R	E	D	Y	A	P	I	F	H	I	D	V	Y	G	T	I	G	A	A	F	D	V	D	I	K	A	M	A	D	Y	I	Q	T	L	A	E	A	A	K	P	F	H	L	R	I	E	G	P	M
Template Known Secondary structure										T	T	S																			S	S	T	T										T	T						T	T	T																	T	T	S							S	B
Template Predicted Secondary structure
Template SS confidence
	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

	194	.							.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure			.	.	.	.	.	.											.	.	.	.	.																			.	.
Query SS confidence			.	.	.	.	.	.											.	.	.	.	.																			.	.
Query Sequence	K	T	.	.	.	.	.	.	R	D	D	S	R	A	F	A	R	E	.	.	.	.	.	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	F	.	.	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V
Query Conservation			.	.	.	.	.	.											.	.	.	.	.																			.	.
Alig confidence			.	.	.	.	.	.											.	.	.	.	.																			.	.
Template Conservation
Template Sequence	D	V	E	D	R	Q	K	Q	M	E	A	M	R	D	L	R	A	E	L	D	G	R	G	V	D	A	E	L	V	A	D	E	W	C	N	T	V	E	D	V	K	F	F	T	D	N	K	A	G	H	M	V	Q	I	K	T	P	D	L	G	G	V	N	N	I	A	D	A	I	M	Y	C	K	A	N	G	M	G	A	Y
Template Known Secondary structure			S	S																			T									T	T			S										T	T		S	S						T	G	G	G	S	S	T													T	T
Template Predicted Secondary structure
Template SS confidence
	277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	C	G	G	T	N	E	T	N	R	S	A	E	V	T	T	N	I	G	M	A	C	G	A	R
Template Known Secondary structure																						T		S
Template Predicted Secondary structure
Template SS confidence
	357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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