Job Description P29208 Confidence 100.00% Date Thu Jan 5 11:45:36 GMT 2012 Rank 4 Aligned Residues 313 % Identity 20% Template c1jpmB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:l-ala-d/l-glu epimerase; PDBTitle: l-ala-d/l-glu epimerase Resolution 2.25 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																				.																																											.	.	.
Query SS confidence																																				.																																											.	.	.
Query Sequence		M	R	S	A	Q	V	Y	R	W	Q	I	P	M	D	A	G	V	V	L	R	D	R	R	L	K	T	R	D	G	L	Y	V	C	L	.	R	E	G	E	R	E	G	W	G	E	I	S	P	L	P	G	F	S	Q	E	T	W	E	E	A	Q	S	V	L	L	A	W	V	N	N	W	L	A	G	D	C	E	.	.	.
Query Conservation																																				.																																											.	.	.
Alig confidence																																				.																																											.	.	.
Template Conservation
Template Sequence		I	I	R	I	E	T	S	R	I	A	V	P	L	T	K	P	F	K	T	A	L	R	T	V	Y	T	A	E	S	V	I	V	R	I	T	Y	D	S	G	A	V	G	W	G	E	A	P	P	T	L	V	I	T	G	D	S	M	D	S	I	E	S	A	I	H	H	V	L	K	P	A	L	L	G	K	S	L	A	G	Y
Template Known Secondary structure																					S	S																T	T	S										B	T	T	T	T		B												T						T	T		B	G	G	G
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
												77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.												.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	P	Q	M	P	S	V	A	F	G	V	S	C	A	L	A	E	L	T	D	T	L	P	Q	A	A	N	Y	R	A	A	P	.	.	.	.	.	.	.	.	.	.	.	L	C	N	G	D	P	D	D	L	I	L	K	L	A	D	.	.	M	P	G	E	K	V	A	K	V	K
Query Conservation		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		E	A	I	L	H	D	I	Q	H	L	L	T	G	N	M	S	A	K	A	A	V	E	M	A	L	Y	D	G	W	A	Q	M	C	G	L	P	L	Y	Q	M	L	G	G	Y	R	D	T	L	E	T	D	Y	T	V	S	V	N	S	P	E	E	M	A	A	D	A	E	N	Y	L	K	Q	G	F	Q	T	L	K	I	K
Template Known Secondary structure											S	S	S	S																					T	S	B					T	T				S				B																						T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																				.																																													.	.
Query SS confidence																				.																																													.	.
Query Sequence		V	G	L	Y	E	A	V	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	L	H	L	R	L	D	A	N	R	A	W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	A	F	L	E	E	P	C	K	T	.	.	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I
Query Conservation																				.																																													.	.
Alig confidence																				.																															.														.	.
Template Conservation																																																			.
Template Sequence		V	G	K	D	D	I	A	T	D	I	A	R	I	Q	E	I	R	K	R	V	G	S	A	V	K	L	R	L	D	A	N	Q	G	W	R	P	K	E	A	V	T	A	I	R	K	M	E	D	A	.	G	L	G	I	E	L	V	E	Q	P	V	H	K	D	D	L	A	G	L	K	K	V	T	D	A	T	D	T	P	I
Template Known Secondary structure			S	S	S																	G	G	G	S							T	T		S															T	.	T										S		T	T													S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		211	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E	G	V	R	A	V	V	I	K	P	T	L	T	G	S	L	E	K	V	R	E	Q	V	Q	A	A	H	A	L	G	L	T	A	V	I	S	S	S	I	E	S	S	L	G	L	T	Q	L	A	R	I	A	A	W	L	T	P	D	T	I	P	G
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		M	A	D	E	S	V	F	T	P	R	Q	A	F	E	V	L	Q	T	R	S	A	D	L	I	N	I	K	L	M	K	A	G	G	I	S	G	A	E	K	I	N	A	M	A	E	A	C	G	V	E	C	M	V	G	S	M	I	E	T	K	L	G	I	T	A	A	A	H	F	A	A	S	K	R	N	I	T	R	F	D
Template Known Secondary structure				S	T	T		S	S											T			S										T	S														T	T								S	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	T	L	D	L	M	Q	A	Q	Q	V	R	R	W	P	G	S	T	L	P	V	V	E	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	D	A	P	L	M	L	K	T	D	V	F	N	G	G	I	T	Y	S	G	S	T	I	S	M	P
Template Known Secondary structure				G	G	G	G	B	S							S					T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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