Job Description P29208 Confidence 80.56% Date Thu Jan 5 11:45:36 GMT 2012 Rank 173 Aligned Residues 117 % Identity 11% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.																					.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.		.	.	.	.			.	.	.	.	160	.	.						.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.												.					.	.								.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.												.					.	.								.	.	.	.	.
Query Sequence		I	L	K	L	A	D	M	P	G	E	K	V	A	K	V	K	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	E	A	V	.	.	.	.	R	D	G	M	V	V	N	L	L	L	E	.	A	I	P	D	.	.	L	H	L	R	L	D	A	.	.	.	.	.	N	R	A
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.												.					.	.								.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.												.					.	.								.	.	.	.	.
Template Conservation
Template Sequence		A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q
Template Known Secondary structure									T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S											S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Query Sequence		W	T	P	L	K	G	Q	Q	F	A	K	Y	V	N	P	D	Y	R	D	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	L	E	E	P	C	K	T	R	D	D	S	R	A	F	A	R	E	T	G	I	A	I	A	W	D	E	S	L	R	E	P	D	F	A	.	.	F	V	A	E	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation
Template Sequence		I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V	G	R	Y	T	D	P	E	K	M	I	E	I	V	T	K	G
Template Known Secondary structure				T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T		S	S						S														T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		228	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	R	A	V	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	A	D	I	I	G	C
Template Known Secondary structure		S		S	B
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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