Job Description P15034 Confidence 100.00% Date Thu Jan 5 11:34:21 GMT 2012 Rank 11 Aligned Residues 350 % Identity 29% Template c3q6dA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:proline dipeptidase; PDBTitle: xaa-pro dipeptidase from bacillus anthracis. Resolution 1.97 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	R	R	Q	A	L	V	E	Q	M	Q	P	G	S	A	A	L	I	F	A	A	P	E	V	T	R	S	A	D	S	E	Y	P	Y	R	Q	N	S	D	F	W	Y	F	T	G	F	N	E	P	E	A	V	L	V	L	I	K	S	D	D	T	H	N	H	S	V	L	F	N	R	V	R	D	L	T	A	E	I	W
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.															.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.															.	.	.
Template Sequence		M	E	K	I	E	R	L	R	S	A	F	D	E	A	G	I	D	G	I	L	L	T	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	R	R	Y	M	A	N	F	T	G	T	A	G	V	V	L	I	S	K	.	.	.	.	.	K	R	A	Q	F	I	T	D	F	R	Y	V	E	Q	.	.	.
Template Known Secondary structure										T	T					T		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S	S							S	.	.	.	.	.	S								G	G	G				.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.															.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.															.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	R	R	L	G	Q	D	A	A	P	E	K	L	G	V	D	R	A	L	A	F	S	E	I	N	Q	Q	L	Y	Q	L	L	N	G	L	D	V	V	Y	H	A	Q	G	E	Y	A	Y	A	D	V	I	V	N	S	A	L	E	K	L	R	K	G	S	R	Q	N	L	T	A	P	A	T	M	I	D	W	R	P	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	S	K	Q	A	V	G	Y	E	I	V	Q	H	A	G	L	I	I	D	E	V	A	K	Q	V	K	E	L	G	I	Q	K	L	G	F	E	Q	D	T	.	.	.	.	.	.	.	.	.	.	L	T	Y	S	S	Y	S	A	H	K	E	A	I	D	A	E	F	I	P	T	S	G	L
Template Known Secondary structure		.	.	.	.	.	.	.	.					S	T	T	S						S	S														T		S						T	T	T	.	.	.	.	.	.	.	.	.	.	S														S							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
										59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.											.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	E	M	R	L	F	K	S	P	E	E	I	A	V	L	R	R	A	G	E	I	T	A	M	A	H	T	R	A	M	E	K	C	R	P	G	M	F	E	Y	H	L	E	G	E	I	H	H	E	F	N	R	H	G	A	R	Y	P	S	Y	N	T	I	V	G	S	G	E	N	G	C	I	L	H	Y	T	E	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	K	L	R	L	I	K	T	D	S	E	I	K	I	L	K	E	A	A	Q	I	A	D	A	A	F	E	H	I	L	S	F	I	R	P	G	V	S	E	I	E	V	S	N	E	L	E	F	F	M	R	K	Q	G	A	T	S	S	S	F	D	I	I	V	A	S	G	L	R	S	A	L	P	H	G	V	A	S	E
Template Known Secondary structure							T	S																								T	T	T			T	T		B															T	T		S			S	S							G	G	G	G	G		T	T		B			S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	M	R	D	G	D	L	V	L	I	D	A	G	C	E	Y	K	G	Y	A	G	D	I	T	R	T	F	P	V	N	G	K	F	T	Q	A	Q	R	E	I	Y	D	I	V	L	E	S	L	E	T	S	L	R	L	Y	R	P	G	T	S	I	L	E	V	T	G	E	V	V	R	I	M	V	S	G	L	V	K	L
Query Conservation
Alig confidence																																.																																																	.
Template Conservation																																.																																																	.
Template Sequence		K	V	I	E	T	G	D	F	V	T	L	D	F	G	A	Y	Y	K	G	Y	C	S	D	I	T	R	T	I	A	V	.	G	E	P	S	D	K	L	K	E	I	Y	N	I	V	L	E	A	Q	L	R	G	V	N	G	I	K	A	G	L	T	G	R	E	A	D	A	L	T	R	D	Y	I	T	E	K	G	Y	G	.
Template Known Secondary structure			B			T	T												T	T											S	.	S																										T	T		B															T	T		G	.
Template Predicted Secondary structure																																.																																																	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	L	K	G	D	V	D	E	L	I	A	Q	N	A	H	R	P	F	F	M	H	G	L	S	H	W	L	G	L	D	V	H	D	V	G	V	Y	G	Q	D	R	S	R	I	L	E	P	G	M	V	L	T	V	E	P	G	L	Y	I	A	P	D	A	E	V	P	E	Q	Y	R	G	I	G	I	R	I	E	D	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	F	G	H	S	T	G	H	G	I	G	L	E	I	H	E	A	P	G	L	A	F	R	S	D	T	V	L	E	P	G	M	A	V	T	V	E	P	G	I	Y	I	P	G	I	G	.	.	.	.	.	.	.	.	.	G	V	R	I	E	D	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G			S		S					S	S	S	S	S						S	T	T				B			T	T												T	T	T		.	.	.	.	.	.	.	.	.					B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template SS confidence
																			279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.										.	.	.	.	330	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	I	T	E	T	G	N	E	N	L	T	A	S	V	V	K	K	P
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		I	I	V	T	S	E	G	N	E	V	I	T	K	.	S	P	K	E	L
Template Known Secondary structure						S	S	S							.	S			S
Template Predicted Secondary structure															.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions