Job Description P15034 Confidence 100.00% Date Thu Jan 5 11:34:21 GMT 2012 Rank 4 Aligned Residues 398 % Identity 15% Template c3cb5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of the s. pombe peptidase homology domain of fact2 complex subunit spt16 (form a) Resolution 2.05 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.										.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.
Query Sequence		E	I	S	R	Q	E	F	Q	R	R	R	Q	A	L	V	E	Q	M	Q	P	.	.	.	.	.	.	.	.	.	G	S	A	A	L	I	F	A	A	P	E	V	T	R	S	A	D	S	E	Y	P	Y	R	Q	N	S	D	F	W	Y	F	T	G	F	N	E	P	E	A	V	L	V	L	I	K	S	D	D	T	H	N
Query Conservation																						.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.												.	.								.																											.	.	.	.
Template Conservation																																										.	.								.																											.	.	.	.
Template Sequence		E	I	D	E	I	T	F	H	K	R	L	G	I	L	L	T	S	W	K	N	E	E	D	G	K	T	L	F	Q	D	C	D	S	I	L	V	T	V	G	A	.	.	H	D	D	T	N	P	Y	.	Q	K	S	T	A	L	H	T	W	L	L	G	Y	E	F	P	S	T	L	I	L	L	E	K	H	R	.	.	.	.
Template Known Secondary structure																					S							T	S	T	T		S								S	.	.			T	T				.												S	S			S	S							S	S		.	.	.	.
Template Predicted Secondary structure																																										.	.								.																											.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	V	L	F	N	R	V	R	D	L	T	A	E	I	W	F	G	R	R	L	G	Q	D	A	A	P	E	K	L	G	V	D	R	A	L	A	F	S	E	I	N	Q	Q	L	Y	Q	L	L	N	G	L	D	V	V	Y	H	A	Q	G	E	Y	A	Y	A	D	V	I	V	N	S	A	L	E	K	L	R	K	G	S
Query Conservation
Alig confidence		.	.	.																																																																.	.
Template Conservation		.	.	.																																																																.	.
Template Sequence		.	.	.	I	T	I	L	T	S	V	N	K	A	N	X	L	T	K	L	A	E	T	K	G	A	A	A	D	V	N	I	L	K	R	T	K	D	A	E	E	N	K	K	L	F	E	K	I	I	E	Y	I	R	A	T	N	K	K	V	G	V	F	P	K	D	K	.	.	T	Q	G	K	F	I	N	E	W	D	S	I
Template Known Secondary structure		.	.	.														G	G	G	G	S		T	T		S	S									S																		T	T	T	S						T	T			.	.			S
Template Predicted Secondary structure		.	.	.																																																																.	.
Template SS confidence
					78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	Q	N	L	T	A	P	A	T	M	I	D	W	R	P	V	V	H	E	M	R	L	F	K	S	P	E	E	I	A	V	L	R	R	A	G	E	I	T	A	M	A	H	T	R	A	M	E	K	C	R	P	G	M	F	E	Y	H	L	E	G	E	I	H	H	E	F	N	R	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	P	V	K	S	E	F	N	L	V	D	A	S	L	G	L	A	K	C	L	A	I	K	D	E	Q	E	L	A	N	I	K	G	A	S	R	V	S	V	A	V	X	S	K	Y	F	V	D	E	L	S	T	Y	I	D	Q	G	K	K	I	T	H	S	K	F	S	D	Q	X	E	S	L	I	D	N	E	A	F	F
Template Known Secondary structure			G	G	G	G	G	G	S															S																																		T	T				B											G	G	G		T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
													223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	H	G	A	R	Y	P	S	Y	N	T	I	V	G	S	G	E	N	G	C	I	L	H	Y	T	E	N	E	C	E	M	R	D	G	D	L	V	L	I	D	A	G	C	E	Y	K	G	Y	A	G	D	I	T	R	T	F	P	V	N	G	K	F	T	Q	A	Q	R	E	I	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																										.		.
Template Conservation																																																																						.		.
Template Sequence		Q	T	K	S	L	K	L	G	D	I	D	L	D	Q	L	E	W	C	Y	T	P	I	I	Q	S	G	G	S	Y	D	L	K	P	S	A	I	T	D	D	R	N	L	H	G	D	V	V	L	C	S	L	G	F	R	Y	K	S	Y	C	S	N	V	G	R	T	Y	L	F	.	D	.	P	D	S	E	Q	Q	K	N	Y
Template Known Secondary structure		G		S	S	S			T	T			G	G	G				S	S						B	T	T	B				S	T	T					S	S	B			S	S											T	T												.	S	.
Template Predicted Secondary structure																																																																						.		.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.		.	.	.	.	.	.	.	.	310
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		D	I	V	L	E	S	L	E	T	S	L	R	L	Y	R	P	G	T	S	I	L	E	V	T	G	E	V	V	R	I	M	V	S	G	L	V	K	L	G	I	L	K	G	D	V	D	E	L	I	A	Q	N	A	H	R	P	F	F	M	H	G	L	S	H	W	L	G	L	D	V	H	D	V	G	.	V	Y	G	Q	D
Query Conservation																																																																												.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	L	V	A	L	Q	K	K	L	F	E	Y	C	R	D	G	A	V	I	G	D	I	Y	T	K	I	L	G	L	I	R	A	K	R	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	P	N	F	V	R	N	L	G	A	G	I	G	I	E	F	R	E	S	S	L	L	V	N	A	K
Template Known Secondary structure																	T	T		B																	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	B		S							S	S	S	S		B	G	G	G			S	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.																	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		R	S	R	I	L	E	P	G	M	V	L	T	V	E	P	G	L	Y	I	.	A	P	D	A	E	V	P	E	Q	Y	R	G	I	G	I	R	I	E	D	D	I	V	I	T	E	T	G	N	E	N	L	T	A	S	V	V	K	K	P	E	E	I
Query Conservation																					.
Alig confidence																					.																																		.
Template Conservation																																																							.
Template Sequence		N	P	R	V	L	Q	A	G	X	T	L	N	L	S	I	G	F	G	N	L	I	N	P	H	P	K	N	S	Q	S	K	E	Y	A	L	L	L	I	D	T	I	Q	I	T	R	S	D	P	I	V	F	T	D	.	S	P	K	A	Q	G	D	I
Template Known Secondary structure					B			T	T															S	S			T	T	S		S														S	S	S				T	T		.				S
Template Predicted Secondary structure																																																							.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.