Job Description P15034 Confidence 100.00% Date Thu Jan 5 11:34:21 GMT 2012 Rank 7 Aligned Residues 399 % Identity 15% Template c3bitA_ PDB info PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of yeast spt16 n-terminal domain Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		E	I	S	R	Q	E	F	Q	R	R	R	Q	A	L	V	E	Q	M	Q	P	G	.	.	.	.	S	A	A	L	I	F	A	A	P	E	V	T	R	S	A	D	S	E	Y	P	Y	R	Q	N	S	D	F	W	Y	F	T	G	F	N	E	P	E	A	V	L	V	L	I	K	S	D	D	T	H	N	H	S	V	L	F
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.											.	.	.	.																																.	.	.	.	.
Template Conservation																																					.	.	.	.																																.	.	.	.	.
Template Sequence		N	I	D	F	D	V	F	K	K	R	I	E	L	L	Y	S	K	Y	N	E	F	E	G	S	P	N	S	L	L	F	V	L	G	S	S	.	.	.	.	N	A	E	N	P	Y	Q	K	T	T	I	L	H	N	W	L	L	S	Y	E	F	P	A	T	L	I	A	L	V	P	G	.	.	.	.	.	K	V	I	I	I
Template Known Secondary structure																			G	G	G	S	T	T			S								S		.	.	.	.		T	T	S	T	T												S	S			S	S							T	T	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.																																.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.
		79	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		N	R	V	R	D	L	T	.	.	A	E	I	W	F	G	R	R	L	G	Q	D	A	A	P	E	K	L	G	V	D	R	A	L	A	F	S	E	I	N	Q	Q	L	Y	Q	L	L	N	G	L	D	V	V	Y	H	A	Q	G	E	Y	A	Y	A	D	V	I	V	N	S	A	L	E	K	L	R	K	G	S	R	Q	N
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence		T	S	S	A	K	A	K	H	L	Q	K	A	I	D	L	F	K	D	P	E	S	K	I	T	L	E	L	W	Q	R	N	N	K	E	P	E	L	N	K	K	L	F	D	D	V	I	A	L	I	N	S	A	G	K	T	V	G	I	P	E	K	D	S	Y	Q	G	K	F	X	T	E	W	N	P	V	W	E	A	A	V
Template Known Secondary structure											T	T					T	T	S	T	T		S										T	T																					S						T	T					S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																													.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	A	P	A	T	M	I	D	W	R	P	V	V	H	E	M	R	L	F	K	S	P	E	E	I	A	V	L	R	R	A	G	E	I	T	A	M	A	H	T	R	A	M	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	R	P	G	M	F
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	N	E	F	N	V	I	D	I	S	L	G	L	S	K	V	W	E	V	K	D	V	N	E	Q	A	F	L	S	V	S	S	K	G	S	D	K	F	X	D	L	L	S	N	E	X	V	R	A	V	D	E	E	L	K	I	T	N	A	K	L	S	D	K	I	E	N	K	I	D	D	V	K	F	L	K	Q	L	S
Template Known Secondary structure					T														S		S																																	T	T				B											G	G	G
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		E	Y	H	L	E	G	E	I	H	H	E	F	N	R	H	G	A	R	Y	P	S	Y	N	T	I	V	G	S	G	E	N	.	G	C	I	L	H	Y	T	E	N	E	C	E	M	R	D	G	D	L	V	L	I	D	A	G	C	E	Y	K	G	Y	A	G	D	I	T	R	T	F	P	V	N	G	K	F	T	Q	A	Q
Query Conservation																																	.
Alig confidence																																	.																																									.
Template Conservation																																																																										.
Template Sequence		P	D	L	S	A	L	C	P	P	N	Y	K	F	N	F	D	L	L	D	W	T	Y	S	P	I	I	Q	S	G	K	K	F	D	L	R	V	S	A	R	S	T	N	D	Q	L	Y	G	N	G	C	I	L	A	S	C	G	I	R	Y	N	N	Y	C	S	N	I	T	R	T	F	L	I	.	D	P	S	E	E	X	A
Template Known Secondary structure						T	T	S		T	T	S				G	G	G				S	S							S	S					S	T	T					S	S	B				S												T	T												.	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	I	Y	D	I	V	L	E	S	L	E	T	S	L	R	L	Y	R	P	G	T	S	I	L	E	V	T	G	E	V	V	R	I	M	V	S	G	L	V	K	L	G	I	L	K	G	D	V	D	E	L	I	A	Q	N	A	H	R	P	F	F	M	H	G	L	S	H	W	L	G	L	D	V	H	D	V	G	V	Y
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	N	Y	D	F	L	L	T	L	Q	K	E	I	V	T	N	I	L	K	P	G	R	T	P	K	E	V	Y	E	S	V	I	E	Y	I	E	K	T	K	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	P	N	F	T	K	N	I	G	S	L	I	G	L	E	F	R	D	S	N	F	I
Template Known Secondary structure																		T			T	T																			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	B		S							S	S	S	S	S		T	T	S	B
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.																	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
				368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.				.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure		.	.																																																	.	.	.
Query SS confidence		.	.																																																	.	.	.
Query Sequence		.	.	G	Q	D	R	S	R	I	L	E	P	G	M	V	L	T	V	E	P	G	L	Y	I	A	P	D	A	E	V	P	E	Q	Y	R	G	I	G	I	R	I	E	D	D	I	V	I	T	E	T	.	.	.	G	N	E	N	L	T	A	S	V	V	K	K	P	E	E	I
Query Conservation		.	.																																																	.	.	.
Alig confidence		.	.																											.	.	.																				.	.	.							.
Template Conservation																														.	.	.																													.
Template Sequence		L	N	V	K	N	D	Y	R	K	I	Q	R	G	D	C	F	N	I	S	F	G	F	N	N	L	K	D	S	.	.	.	Q	S	A	N	N	Y	A	L	Q	L	A	D	T	V	Q	I	P	L	D	E	T	E	P	P	R	F	L	T	.	N	Y	T	K	A	K	S	Q	I
Template Known Secondary structure		S	S	T	T			S					T	T															T	.	.	.	T	T																S	S	T	T	S					S		.		S
Template Predicted Secondary structure																														.	.	.																													.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.				.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.