Job Description P15034 Confidence 100.00% Date Thu Jan 5 11:34:21 GMT 2012 Rank 10 Aligned Residues 347 % Identity 25% Template c2howB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:356aa long hypothetical dipeptidase; PDBTitle: dipeptidase (ph0974) from pyrococcus horikoshii ot3 Resolution 2.40 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.						.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		R	R	Q	A	L	V	E	Q	M	Q	P	G	S	A	A	L	I	F	A	A	P	E	V	T	R	S	A	D	S	E	Y	P	Y	R	Q	N	S	D	F	W	Y	F	T	G	F	N	E	P	E	A	.	.	.	.	.	V	L	V	L	I	K	S	D	D	T	H	N	H	S	V	L	F	N	R	V	R	D	L	T	A
Query Conservation																																																				.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.					.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Sequence		R	L	E	K	F	I	H	L	L	G	E	R	G	F	D	G	A	L	I	S	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	L	Y	Y	L	T	G	L	R	L	H	E	V	G	E	R	L	A	I	L	A	V	.	.	.	.	S	A	E	G	D	Y	R	F	L	A	P	S	L	Y	E	N	V
Template Known Secondary structure													T	T								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S			T	T	S							.	.	.	.		T	T	S								G	G	G	T	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.															.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	W	F	G	R	R	L	G	Q	D	A	A	P	E	K	L	G	V	D	R	A	L	A	F	S	E	I	N	Q	Q	L	Y	Q	L	L	N	G	L	D	V	V	Y	H	A	Q	G	E	Y	A	Y	A	D	V	I	V	N	S	A	L	E	K	L	R	K	G	S	R	Q	N	L	T	A	P	A	T	M	I	D	W
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		V	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	F	P	A	T	F	W	H	D	G	E	N	P	Y	A	K	L	R	E	I	L	E	E	L	G	I	S	K	G	R	I	L	I	.	.	.	.	.	.	.	.	.	E	D	T	M	R	A	D	W	L	I	G	I	M	K	L	G	K	F	T	F	Q	P	L
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S						T	T	S													T	T		S							.	.	.	.	.	.	.	.	.		T	T	S									T	T	S	S							T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		64														.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.										.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	V	V	H	E	M	R	L	F	K	S	P	E	E	I	A	V	L	R	R	A	G	E	I	T	A	M	A	H	T	R	A	M	E	K	C	R	P	G	M	F	E	Y	H	L	E	G	E	I	H	H	E	F	N	R	H	G	A	R	Y	P	S	Y	N	T	I	V	G	S	G	E	N	G	C	I	L	H	Y	T
Query Conservation
Alig confidence																																																															.
Template Conservation																																																															.
Template Sequence		S	S	L	I	K	E	L	R	M	I	K	D	K	E	E	V	K	M	M	E	H	A	S	R	I	A	D	K	V	F	E	E	I	L	T	W	D	L	I	G	M	K	E	R	E	L	A	L	K	I	E	L	L	I	R	E	L	S	D	G	I	.	A	F	E	P	I	V	A	S	G	E	N	A	A	N	P	H	H	E
Template Known Secondary structure										T	S																								T	T	S			T	T		B																S	S			.	S	S							G	G	G	G	G		T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	E	C	E	M	R	D	G	D	L	V	L	I	D	A	G	C	E	Y	K	G	Y	A	G	D	I	T	R	T	F	P	V	N	G	K	F	T	Q	A	Q	R	E	I	Y	D	I	V	L	E	S	L	E	T	S	L	R	L	Y	R	P	G	T	S	I	L	E	V	T	G	E	V	V	R	I	M	V	S	G	L
Query Conservation
Alig confidence																																			.
Template Conservation																																			.
Template Sequence		P	G	E	R	K	I	R	K	G	D	I	I	I	L	D	Y	G	A	R	W	K	G	Y	C	S	D	I	T	R	T	I	G	L	.	G	E	L	D	E	R	L	V	K	I	Y	E	V	V	K	D	A	Q	E	S	A	F	K	A	V	R	E	G	I	K	A	K	D	V	D	S	R	A	R	E	V	I	S	K	A	G
Template Known Secondary structure				S		B			T	T												T	T											S	.	S	S																								B	T	T	S	B															T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	L	G	I	L	K	G	D	V	D	E	L	I	A	Q	N	A	H	R	P	F	F	M	H	G	L	S	H	W	L	G	L	D	V	H	D	V	G	V	Y	G	Q	D	R	S	R	I	L	E	P	G	M	V	L	T	V	E	P	G	L	Y	I	A	P	D	A	E	V	P	E	Q	Y	R	G	I	G	I	R	I
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template Sequence		Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	F	I	H	R	T	G	H	G	L	G	L	D	V	H	E	E	P	Y	I	G	P	D	G	E	V	I	L	K	N	G	M	T	F	T	I	E	P	G	I	Y	V	P	G	L	G	.	.	.	.	.	.	.	.	.	G	V	R	I
Template Known Secondary structure			G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G			S		S					S	S	S	S	S						S	T	T				B			T	T												T	T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		280	.																			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.										.	330	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	D	I	V	I	T	E	T	G	N	E	N	L	T	A	S	V	V	K	K	P
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		E	D	D	I	V	V	D	E	G	K	G	R	R	L	T	K	.	A	E	R	E	L
Template Known Secondary structure		B							T	T					S			.				S
Template Predicted Secondary structure																		.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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