Job Description P15034 Confidence 100.00% Date Thu Jan 5 11:34:21 GMT 2012 Rank 8 Aligned Residues 345 % Identity 29% Template c1wy2B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of the prolidase from pyrococcus horikoshii ot3 Resolution 1.70 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	R	Q	A	L	V	E	Q	M	Q	P	G	S	A	A	L	I	F	A	A	P	E	V	T	R	S	A	D	S	E	Y	P	Y	R	Q	N	S	D	F	W	Y	F	T	G	F	N	E	P	E	A	V	L	V	L	I	K	S	D	D	T	H	N	H	S	V	L	F	N	R	V	R	D	L	T	A	E	I	W	F
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.															.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.															.	.	.	.	.	.	.
Template Sequence		E	K	V	K	K	I	I	E	F	M	D	K	N	S	I	D	A	V	L	I	A	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	V	Y	Y	I	S	G	A	S	P	L	A	G	G	Y	I	L	.	.	.	.	I	T	G	E	S	A	T	L	Y	V	P	E	L	E	.	.	.	.	.	.	.
Template Known Secondary structure														T	T		S						S		.	.	.	.	.	.	.	.	.	.	.	.	.	.								S				S	S						.	.	.	.			S	S								G	G	G	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.															.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.															.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	R	L	G	Q	D	A	A	P	E	K	L	G	V	D	R	A	L	A	F	S	E	I	N	Q	Q	L	Y	Q	L	L	N	G	L	D	V	V	Y	H	A	Q	G	E	Y	A	Y	A	D	V	I	V	N	S	A	L	E	K	L	R	K	G	S	R	Q	N	L	T	A	P	A	T	M	I	D	W	R	P	V	V
Query Conservation
Alig confidence		.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	Y	E	M	A	K	E	E	S	N	I	P	V	E	K	F	K	K	M	D	E	F	Y	K	A	L	E	G	I	K	S	L	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	S	L	P	Y	G	F	I	E	E	L	K	K	K	A	N	I	K	E	F	K	K	V	D	D	V	I
Template Known Secondary structure		.	.	.	.	.	.									S	S						S	S									T	T		S					.	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.														.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	M	R	L	F	K	S	P	E	E	I	A	V	L	R	R	A	G	E	I	T	A	M	A	H	T	R	A	M	E	K	C	R	P	G	M	F	E	Y	H	L	E	G	E	I	H	H	E	F	N	R	H	G	A	R	Y	P	S	Y	N	T	I	V	G	S	G	E	N	G	C	I	L	H	Y	T	E	N	E	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	D	M	R	I	I	K	S	E	K	E	I	K	I	I	E	K	A	C	E	I	A	D	K	A	V	M	A	A	I	E	E	I	T	E	G	K	K	E	R	E	V	A	A	K	V	E	Y	L	M	K	M	N	G	A	E	K	P	A	F	D	T	I	I	A	S	G	Y	R	S	A	L	P	H	G	V	A	S	D	K
Template Known Secondary structure						T	S																													T	T		B															T	T		S			S	S							G	G	G	G	G	S	T	T		B			S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	R	D	G	D	L	V	L	I	D	A	G	C	E	Y	K	G	Y	A	G	D	I	T	R	T	F	P	V	N	G	K	F	T	Q	A	Q	R	E	I	Y	D	I	V	L	E	S	L	E	T	S	L	R	L	Y	R	P	G	T	S	I	L	E	V	T	G	E	V	V	R	I	M	V	S	G	L	V	K	L	G
Query Conservation
Alig confidence																															.																																													.	.	.	.	.	.
Template Conservation																															.																																													.	.	.	.	.	.
Template Sequence		R	I	E	R	G	D	L	V	V	I	D	L	G	A	L	Y	Q	H	Y	N	S	D	I	T	R	T	I	V	V	.	G	S	P	N	E	K	Q	K	E	I	Y	E	I	V	L	E	A	Q	K	K	A	V	E	S	A	K	P	G	I	T	A	K	E	L	D	S	I	A	R	N	I	I	A	E	.	.	.	.	.	.
Template Known Secondary structure		B			T	T												T	T											S	.	S																										T	T	S	B															.	.	.	.	.	.
Template Predicted Secondary structure																															.																																													.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	K	G	D	V	D	E	L	I	A	Q	N	A	H	R	P	F	F	M	H	G	L	S	H	W	L	G	L	D	V	H	D	V	G	V	Y	G	Q	D	R	S	R	I	L	E	P	G	M	V	L	T	V	E	P	G	L	Y	I	A	P	D	A	E	V	P	E	Q	Y	R	G	I	G	I	R	I	E	D	D	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Y	G	Y	G	E	Y	F	N	H	S	L	G	H	G	V	G	L	E	V	H	E	W	P	R	V	S	Q	Y	D	E	T	V	L	R	E	G	M	V	I	T	I	E	P	G	I	Y	I	P	K	I	G	.	.	.	.	.	.	.	.	.	G	V	R	I	E	D	T	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T	T		G	G	G			S		S					S	S	S	S	S						S	T	T				B			T	T												T	T	T		.	.	.	.	.	.	.	.	.					B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
														275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.										.	.	.	.	330	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	T	E	T	G	N	E	N	L	T	A	S	V	V	K	K	P
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		L	I	T	K	N	G	S	K	R	L	T	K	.	T	E	R	E	L
Template Known Secondary structure					S	S	S				S	S		.			S
Template Predicted Secondary structure														.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions