Return to main results Retrieve Phyre Job Id

Job DescriptionP39212
Confidence96.13%DateThu Jan 5 11:58:31 GMT 2012
Rank20Aligned Residues57
% Identity19%Templated2oa4a1
SCOP infoDNA/RNA-binding 3-helical bundle TrpR-like SPO1678-like
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.......
Predicted Secondary structure 






















Query SS confidence 
























































Query Sequence  APMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTP
Query Conservation    
 

 

 


  

    
 
 
   

   


  

  
 
           
Alig confidence 
























































Template Conservation 
   
 







 

 

  



  

  

 

 


  
  
   

  


Template Sequence  PPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDALK
Template Known Secondary structure 

S

S


TT

TT
SS


SSSS
Template Predicted Secondary structure 













Template SS confidence 
























































   27..30.........40.........50.........60.........70.........80...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions