Phyre 2 alignment of P52124 with d1g8pa

Job Description P52124
Confidence 90.87% Date Thu Jan 5 12:05:27 GMT 2012

Rank 24 Aligned Residues 247

% Identity 15% Template d1g8pa_

SCOP info P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases Extended AAA-ATPase domain

Resolution 2.10

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	M	T	L	A	E	S	G	E	R	K	S	T	V	D	K	L	L	M	K	P	L	Y	Q	L	E	E	D	L	F	E	K	Y	T	H	D	L	T	A	W	R	N	D	E	A	I	F	N	I	E	K	K	A	L	M	S	K	L	K	S	D	I	R	R	N	K	D	H	L	A	T	N	E	R	L	K	E	L	L	T
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	L	V	F	G	D	R	G	T	G	K	S	T	A	V	R	A	L	A	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	I	E	A	V	E	G	C	P	V	S	S	P	N	V	E	M	I	P	D	W	A	T	V	L	S	T
Template Known Secondary structure							G	G	G		T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T		T	T			S	S	G	G	G	S		T	T				S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.																															70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.																		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	N	P	K	A	P	V	R	F	K	F	L	F	N	D	A	T	P	A	A	I	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	L	C	G	H	W	R	S	V	G	I	M	S	D	E	A	G	I	I	F	N	G	Y	T	L	N	E	L	P	F	I	N	K	M	W	D	G	S	I	F
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																																																									.	.	.	.
Template Sequence	N	V	I	R	K	P	T	P	V	V	D	L	P	L	G	V	S	E	D	R	V	V	G	A	L	D	I	E	R	A	I	S	K	G	E	K	A	F	E	P	G	L	L	A	R	A	N	R	G	Y	L	Y	I	D	E	C	.	.	.	.	N	L	L	E	D	H	I	V	D	L	L	L	D	V	A	Q	S	G	E	N
Template Known Secondary structure														T	T																				G	G	G										T	T						T	T	G	.	.	.	.	G	G	S															S
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

	209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	E	R	K	N	E	P	E	K	L	I	R	D	A	R	I	T	L	S	L	M	V	Q	P	N	V	F	K	G	Y	I	D	R	K	G	D	M	A	K	G	I	G	F	F	A	R	C	L	M	C	Q	P	A	S	T	Q	G	N	R	K	I	S	N	P	I	F	S	N	E	H	L	P	V	F	H	Q	R	L	M
Query Conservation
Alig confidence							.																.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation							.																.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Sequence	V	V	E	R	D	G	.	L	S	I	R	H	P	A	R	F	V	L	V	G	S	G	.	.	.	.	.	.	.	.	.	.	.	N	P	E	E	G	D	L	R	P	Q	L	L	D	R	F	G	L	S	V	.	.	.	.	.	.	.	.	.	E	V	L	S	P	R	D	V	E	T	R	V	E	V	I	R	R	R	D
Template Known Secondary structure					T	T	.																.	.	.	.	.	.	.	.	.	.	.		S		S									T	T		S				.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure							.																.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template SS confidence
	174	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.												.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.										.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

	289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340												.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	I	V	N	E	S	I	I	K	I	N	E	N	N	R	I	C	L	R	F	S	A	E	A	E	R	H	W	I	E	F	Y	N	Q	V	E	S	E	M	R	M	I	G	L	L	Y	D	F	K	D	Y	A	.	.	.	.	.	.	.	.	.	.	.	S	K	M	A	E	N	M	A	R	L	A	A	L	L	H	Y	F
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.
Template Sequence	T	Y	D	A	D	P	K	A	F	L	E	E	W	R	.	.	.	.	.	.	.	.	P	K	D	M	D	I	R	N	Q	I	L	E	A	R	E	R	L	P	K	V	E	A	P	N	T	A	L	Y	D	C	A	A	L	C	I	A	L	G	S	D	G	L	R	G	E	L	T	L	L	R	S	A	R	A	L	A	A	L
Template Known Secondary structure															.	.	.	.	.	.	.	.																	G	G	G		B																S	S	S		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.
Template SS confidence
	233	.	.	.	.	.	.	240	.	.	.	.	.	.									.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

	358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	D	G	G	D	I	S	V	T	A	V	K	A	A	V	E	I	V
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence	E	G	.	A	T	A	V	G	R	D	H	L	K	R	V	A	T	M	A
Template Known Secondary structure	T	T	.		S	B
Template Predicted Secondary structure			.
Template SS confidence
	305	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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