Job Description P52124 Confidence 91.48% Date Thu Jan 5 12:05:27 GMT 2012 Rank 17 Aligned Residues 299 % Identity 13% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	T	L	A	E	S	G	E	R	K	S	T	V	D	K	L	L	M	K	P	L	Y	Q	L	E	E	D	L	F	E	K	Y	T	H	D	L	T	A	W	R	N	D	E	A	I	F	N	I	E	K	K	A	L	M	S	K	L	K	S	D	I	R	R	N	K	D	H	L	A	T	N	E	R	L	K	E	L	L	T
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	R	A	S	S	L	G	V	L	V	K	P	I	Y	V	N	A	R	H	R	E	T	P	Y	R	V	A	S	A	I	A
Template Known Secondary structure						B		T	T	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T										T	T	T	S		S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80																											.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	P	K	A	P	V	R	F	K	F	L	F	N	D	A	T	P	A	A	I	K	A	H	L	C	G	H	W	R	S	V	G	I	M	S	D	E	A	G	I	I	F	N	G	Y	T	L	N	E	L	P	F	I	N	K	M	W	D	G	S	I	F	T	V	E	R	K	N	E	P	E	K	L	I	R	D	A	R	I
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	D	L	L	Y	R	I	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	Q	E	L	V
Template Known Secondary structure					S					S	S																T	T	S		S								T	T	T					S	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																		170	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	S	L	M	V	Q	P	N	V	F	K	G	Y	I	D	R	K	G	D	M	A	K	G	I	G	F	F	A	R	C	L	M	C	Q	P	A	S	T	Q	G	N	R	K	I	S	N	P	I	F	S	N	E	H	L	P	V	F	H	Q	R	L	M	E	I	V	N	E	S	I	I	K	I	N	E	N	N	R	I	C
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	V	G	I	T	N	S	L	G	F	V	E	N	L	.	.	.	.	.	.	.	.	E	P	R	V	K	S	S	L	G	E	V	E	.	.	.	.	.	.	.	.	L	V	F	P	P	Y	T	A	P	Q	L	R	D	I	L	E	T	R	A	E	E	A	.	.	.	.	.	.	.	.	.	.	.	.	F	N	P
Template Known Secondary structure								S		S	T	T	S	S	S	S	.	.	.	.	.	.	.	.						T	T	T	T	S			.	.	.	.	.	.	.	.			B																				.	.	.	.	.	.	.	.	.	.	.	.	B		T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.									.	.	.	.	200	.	.	.	.	.	.	.									.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.													230	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	F	S	A	E	A	E	R	H	W	I	E	F	Y	N	Q	V	E	S	E	M	R	M	I	G	L	L	Y	D	F	K	D	Y	A	S	K	M	A	E	N	M	A	R	L	A	A	L	L	H	Y	F	S	G	D	G	G	D	I	S	V	T	A	V	K	A	A	V	E	I	V	A	W	Y	I	E	E	Y	I	R
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		G	V	L	D	P	D	V	V	P	L	C	A	A	L	A	A	R	E	H	G	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	A	L	D	L	L	R	V	A	G	E	I	A	E	R	R	R	.	E	E	R	V	R	R	E	H	V	Y	S	A	R	A	E	I	E	R	D	R	V	S	E	V	V
Template Known Secondary structure		T	T	B		S	S											S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T	.		S		B
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.															.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.								.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.
Query Sequence		L	F	S	K	K	E	E	F	S	L	D	V	S	E	A	D	E	L	Y	C	W	I	K	D	Y	C	T	Q	K	F	S	S	C	I	K	K	N	I	I	.	.	.	.	.	.	.	L	Q	F	G	P	N	K	F	R	N	R	D	K	A	N	E	L	I	R	I	L	I	S	Q	N	K	I	F	I	S	S	W	G	K
Query Conservation																																									.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.													.	.														.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.													.	.
Template Sequence		R	T	L	P	.	.	.	.	.	.	.	.	L	H	A	K	L	V	L	L	S	I	M	M	.	.	L	E	D	G	G	R	P	A	S	T	G	E	I	Y	E	R	Y	K	E	L	T	S	T	L	G	L	E	H	V	T	L	R	R	V	S	G	I	I	S	E	L	D	M	L	G	I	V	K	S	R	V	V	S	R
Template Known Secondary structure			S	S		.	.	.	.	.	.	.	.													.	.		S	S	S	S																			T	T																			T	T	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.													.	.
Template SS confidence
		298	.	300	.									.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		459	460
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		368	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions