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Job DescriptionP77619
Confidence99.12%DateThu Jan 5 12:31:10 GMT 2012
Rank39Aligned Residues260
% Identity17%Templated1dy6a_
SCOP infobeta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase
Resolution2.1

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  RLNQMDRWISQQVDVGYPSVNLLII. . KDNQIVYRKAWGAAKKYDGSVLMEQPVKATTGTLYDLASNTKMYATNFALQKL
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Template Sequence  KSDAAAKQIKKLEEDFDGRIGVFAIDTGSGNTF. . . . . . . . . . . . . . . . . . . . . GYRSDERFPLCSSFKGF. LAAAVLER
Template Known Secondary structure  TTTTT

.....................STTS

GGGG.
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   25....30.........40.........50....... ..60.........70.... .....80..
 
   117..120......... 130.........140.........150.........160.........170.........180.........190....
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Query Sequence  MSEGKLHPDDRIA. . KYIPGFADSPNDTIKGKNTLRISDLLHHSGGFPADPQYPNKAVAGALYSQDKGQTLEMIKRTPLE
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Template Sequence  VQQKKLDINQKVKYESRDLEYHSPITTKYKGS. GMTLGDMAS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTSS
TT


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TTTT.
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   195....200.........210.........220.........230.........240.........250.........260.........270....
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Query Sequence  YQPGSKHIYSDVDYMLLGFIVESVTGQPLDRYVEESIYRPLGLTHTVFNPLLKGFKPQQIAATELNGNTRDGVIHFPNIR
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Template Sequence  . . . . AALQYSDNGATNI. . IMERFLG. . . GPEGMTKFMRSIGDNEFRLDRWELELNTAIP. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ....S

..TS
...TT
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TTGGGG

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   125....130....... ..140.... .....150.........160.........170.....
 
   275....280.........290.........300.........310.........320.........330.........340.........350....
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Query Sequence  TSTLWGQVHDEKAFYSMGGVSGHAGLFSNTGDIAVLMQTMLNGGGYGDVQLFNAETVKMFTTSSKEDATFGLGWRVNGNA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . GDKRDTSTPKAVANSLNKLALG. . . . . . NVLNAKVKAIYQNWLKGNTTGDARIRASVPA
Template Known Secondary structure  .....................T

TT
TS......SSS
T
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TTTGGGGS
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   175....180.........190...... ...200.........210.........220.......
 
   355....360.........370.........380.... .....390.........400.........410.........420.........430..
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Query Sequence  TMTPTFGTLASPQTYGHTGWTGTVTVIDPV. . NHMTIVMLSNKPHSPVADPQKNPNMFESGQLPIATYGWVVDQVYAALK
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Template Sequence  DWVVGDKT. . . . GSCGAYGTANDYAVIWPKNRAPLIVSIYTTRKSKDDKHSDKTIA. . . . . . . . . . . . . EASRIAIQAID
Template Known Secondary structure  TS....
SSTT

TTS

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   228.230..... ....240.........250.........260.........270......... 280.........290
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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