Job Description P77619 Confidence 100.00% Date Thu Jan 5 12:31:10 GMT 2012 Rank 15 Aligned Residues 317 % Identity 22% Template c3o3vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of clbp peptidase domain Resolution 2.40 Å

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		41	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		N	Q	M	D	R	W	I	S	Q	Q	V	D	.	V	G	Y	P	S	V	N	L	L	I	I	K	D	N	Q	I	V	Y	R	K	A	W	G	A	A	K	K	Y	D	G	S	V	L	M	E	Q	P	V	K	A	T	T	G	T	L	Y	D	L	A	S	N	T	K	M	Y	A	T	N	F	A	L	Q	K	L	M	S	E
Query Conservation														.
Alig confidence														.																.											.	.	.	.	.	.	.																							.
Template Conservation																														.											.	.	.	.	.	.	.																							.
Template Sequence		E	R	L	S	T	L	I	H	Q	R	M	Q	E	A	K	V	P	A	L	S	V	S	V	T	I	K	G	V	.	R	Q	R	F	V	Y	G	V	A	D	.	.	.	.	.	.	.	V	A	S	Q	K	A	N	T	L	D	T	V	Y	E	L	G	S	M	S	K	A	F	.	T	G	L	V	V	Q	I	L	I	Q	E
Template Known Secondary structure																T		S									T	T		.											.	.	.	.	.	.	.	T	T	T	T					T	T		B				G	G	G	G				.											T
Template Predicted Secondary structure																														.											.	.	.	.	.	.	.																							.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.								.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	L	H	P	D	D	R	I	A	K	Y	I	P	G	F	A	D	S	P	N	D	T	I	K	G	K	N	T	L	R	I	S	D	L	L	H	H	S	G	G	F	P	A	D	P	Q	Y	P	N	K	A	V	A	G	A	L	Y	S	Q	D	K	G	Q	T	L	E	M	I	K	R	T	P	L	E	Y	Q	P	G	S
Query Conservation
Alig confidence																							.	.	.																															.	.	.	.	.	.
Template Conservation																							.	.	.																															.	.	.	.	.	.
Template Sequence		G	R	L	R	Q	G	D	D	I	I	T	Y	L	P	E	M	R	L	N	Y	Q	.	.	.	G	K	P	A	S	L	T	V	A	D	F	L	Y	H	T	S	G	L	P	F	S	T	L	A	R	L	E	N	P	M	.	.	.	.	.	.	P	G	S	A	V	A	Q	Q	L	R	N	E	N	L	L	F	A	P	G	A
Template Known Secondary structure		T	S			T	T	S	B						T	T						T	.	.	.	T						B						T	T		S				T								S			.	.	.	.	.	.	S	S							S	T	T				S	S		T	T	S
Template Predicted Secondary structure																							.	.	.																															.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	I	Y	S	D	V	D	Y	M	L	L	G	F	I	V	E	S	V	T	G	Q	P	L	D	R	Y	V	E	E	S	I	Y	R	P	L	G	L	T	H	T	V	F	N	P	L	L	K	G	F	K	P	Q	Q	I	A	A	T	E	L	N	G	N	T	R	D	G	V	I	H	F	P	N	I	R	T	S	T	L	W
Query Conservation
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	S	Y	A	S	A	N	Y	D	V	L	G	A	V	I	E	N	V	T	G	K	T	F	T	E	V	I	A	E	R	L	T	Q	P	L	G	M	S	A	T	V	A	V	K	G	D	E	I	I	V	N	K	A	S	G	Y	K	L	G	F	G	K	P	V	L	F	H	A	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T														S	S										T					T		S	S						S	S				T	T	B				B			S	S	S			B				S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.											.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	V	H	D	E	K	A	F	Y	S	M	G	G	V	S	G	H	A	G	L	F	S	N	T	G	D	I	A	V	L	M	Q	T	M	L	N	G	G	G	Y	G	D	V	Q	L	F	N	A	E	T	V	K	M	F	T	T	S	S	K	E	D	A	.	.	.	.	.	.	.	.	.	.	T	F	G	L	G	W	R
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	P	L	A	R	N	H	V	P	A	A	Y	I	H	S	T	L	P	D	M	E	I	W	I	D	A	W	L	H	R	.	.	.	.	.	.	K	A	L	P	A	T	L	R	E	A	M	S	N	S	W	R	G	N	S	D	V	P	L	A	A	D	N	R	I	L	Y	A	S	G	W	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.				S	T	T					T																	T	G	.	.	.	.	.	.	G	G	S												T					S	S				S	S							S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.
Template SS confidence
											252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280							.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		V	N	G	N	A	T	M	T	P	T	F	G	T	L	A	S	P	Q	T	Y	G	H	T	G	W	T	.	.	.	G	T	V	T	V	I	D	P	V	N	H	M	T	I	V	M	L	S	N	K	P	H	S	P	V	A	D	P	Q	K	N	P	N	M	F	E	S	G	Q	L	P	I	A	T	Y	G	W	V	V	D	Q
Query Conservation																												.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.										.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	Q	N	Q	G	.	.	.	.	.	.	.	.	.	.	.	P	Y	I	S	H	G	G	Q	N	P	N	F	S	S	C	I	A	L	R	P	D	Q	Q	I	G	I	V	A	L	A	N	M	N	S	N	L	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	C	A	D
Template Known Secondary structure					T	T	S	.	.	.	.	.	.	.	.	.	.	.										S	S									G	G	G	T								S	B							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.												.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360																					.	.	.	.	.
		427	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	A	A	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	N	Y	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions