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Job DescriptionP77619
Confidence98.15%DateThu Jan 5 12:31:10 GMT 2012
Rank60Aligned Residues216
% Identity23%Templatec3mfdB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacb; PDBTitle: the structure of the beta-lactamase superfamily domain of d-alanyl-d-2 alanine carboxypeptidase from bacillus subtilis
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   56...60.........70.........80.........90.........100.........110.........120.........130.....
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Query Sequence  PSVNLLIIKDNQIVYRKAWGAAKKYDGSVLMEQPVKATTGTLYDLASNTKMYATNFALQKLMSEGKLHPDDRIAKYIPGF
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Template Sequence  KSAIIIDGASGRVLYAK. . . . . . . . . . . . . . . . . . . . DEHQKRRIASITKIX. TAV. . . LAIESGKXDQTVTVSANAVRT
Template Known Secondary structure  STTT

....................STT

B

GGGG....TT
TTS

T
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   34.....40.........50 .........60..... ... .70.........80.........
 
   136...140.........150.........160.........170.........180.........190.........200.........210.....
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Query Sequence  ADSPNDTIKGKNTLRISDLLHHSGGFPADPQYPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIV
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Template Sequence  EGSAIYLTEG. QKVKLKDLVY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLXLRSGNDAAVAIAEHV
Template Known Secondary structure 
SS




TT.
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   90......... 100......... 110.........120.......
 
   216...220......... 230.........240.........250.........260.........270.........280.........290...
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Query Sequence  ESVTGQPLDRYVEE. . SIYRPLGLTHTVFNPLLKGFKPQQIAATELNGNTRDGVIHFPNIRTSTLWGQVHDEKAFYSMGG
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Template Sequence  . . . . GGSLDGFVYXXNQKAEQLGXKNTRF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QNPHG
Template Known Secondary structure  ....SST
TT
B
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   128.130.........140.........150.. .....
 
   294.....300.........310.........320.........330.........340.........350.........360.........370...
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Query Sequence  VSGHAGLFSNTGDIAVLMQTMLNGGGYGDVQLFNAETVKMFTTSSKEDATFGLGWRVNGNATMTPTFGTLASPQTYGHTG
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Template Sequence  LDDHENHYSTAYDXAILTKYAXKL. . . . . . . . . . KDYQKISGTKIYKAETXESVWKNKNKLLTXLYPYSTGGKTGYTKLA
Template Known Secondary structure 
S
SSS
BB
TTS..........T
S
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S
TT
TTTTT
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   158.160.........170.........180. ........190.........200.........210.........220.......
 
   374.....380.........390.......
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Query Sequence  WTGTVTVIDPVNHMTIVMLSNKPH
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Template Sequence  KRTLVSTASKDGIDLIAVTINDPN
Template Known Secondary structure  TTS
TT
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   228.230.........240.........250.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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