Job Description P77619 Confidence 100.00% Date Thu Jan 5 12:31:10 GMT 2012 Rank 14 Aligned Residues 319 % Identity 18% Template c2qz6A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase; PDBTitle: first crystal structure of a psychrophile class c beta-2 lactamase Resolution 2.26 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		E	R	L	N	Q	M	D	R	W	I	S	Q	Q	V	D	V	G	.	Y	P	S	V	N	L	L	I	I	K	D	N	Q	I	V	Y	R	K	A	W	G	A	A	K	K	Y	D	G	S	V	L	M	E	Q	P	V	K	A	T	T	G	T	L	Y	D	L	A	S	N	T	K	M	Y	A	T	N	F	A	L	Q	K	L
Query Conservation																			.
Alig confidence																			.																		.							.	.	.	.	.	.	.																							.
Template Conservation																																					.							.	.	.	.	.	.	.																							.
Template Sequence		D	I	R	Q	V	V	D	S	T	V	E	P	L	M	Q	Q	Q	D	I	A	G	L	S	V	A	V	I	Q	N	G	K	A	Q	Y	F	.	N	Y	G	V	A	N	.	.	.	.	.	.	.	K	D	S	K	Q	P	I	T	E	N	T	L	F	E	I	G	S	V	S	K	T	F	.	T	A	T	L	A	G	Y	A
Template Known Secondary structure																		T	T		S									T	T						.				B	S		.	.	.	.	.	.	.	T	T	T			B			T	T		B				G	G	G					.
Template Predicted Secondary structure																																					.							.	.	.	.	.	.	.																							.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	E	G	K	L	H	P	D	D	R	I	A	K	Y	I	P	G	F	A	D	S	P	N	D	T	I	K	G	K	N	T	L	R	I	S	D	L	L	H	H	S	G	G	F	P	A	D	P	Q	Y	P	N	K	A	V	A	G	A	L	Y	S	Q	D	K	G	Q	T	L	E	M	I	K	R	T	P	L	E	Y	Q
Query Conservation
Alig confidence																						.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	N	G	K	L	K	L	S	D	P	A	S	Q	Y	L	P	A	L	R	.	.	.	.	.	.	G	D	K	F	D	H	I	S	L	L	N	L	G	T	Y	T	A	G	G	L	P	L	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	G	K	M	I	S	Y	Y	Q	H	W	K	P	A	F	A
Template Known Secondary structure				T	T	S			T	T	S	B	G	G	G	G		G	G	G	T	.	.	.	.	.	.	T	S	G	G	G	S	S	B						T	T		S	S				S	S		.	.	.	.	.	.	.	.	.	.	.	.	.															S	S
Template Predicted Secondary structure																						.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.														.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	S	K	H	I	Y	S	D	V	D	Y	M	L	L	G	F	I	V	E	S	V	T	G	Q	P	L	D	R	Y	V	E	E	S	I	Y	R	P	L	G	L	T	H	T	V	F	N	P	L	L	K	G	F	K	P	Q	Q	I	A	A	T	E	L	N	G	N	T	R	D	G	V	I	H	F	P	N	I	R	T	S
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		P	G	T	Q	R	L	Y	S	N	P	S	I	G	L	F	G	H	L	A	A	Q	S	L	G	Q	P	F	E	K	L	M	E	Q	T	V	L	P	K	L	G	L	K	H	T	F	I	S	V	P	E	T	Q	M	S	L	Y	A	Q	G	Y	D	K	A	G	K	P	V	R	V	S	P	G	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T																			T	T	T	S									T	T	T	G	G	G	T		S	S			S	S			G	G	G	G	G	G	B				B		T	T	S		B							.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.						340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		T	L	W	G	Q	V	H	D	E	K	A	F	Y	S	M	G	G	V	S	G	H	A	G	L	F	S	N	T	G	D	I	A	V	L	M	Q	T	M	L	N	G	G	G	Y	G	D	V	Q	L	F	N	A	E	T	V	K	M	F	T	T	S	S	K	.	.	.	.	.	E	D	A	T	F	G	L	G	W	R	V	N
Query Conservation																																																																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.																	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	D	A	E	A	Y	G	I	K	T	S	T	S	D	L	I	H	Y	V	E	V	N	M	H	P	.	.	.	.	.	.	A	K	L	E	K	P	L	Q	Q	A	I	A	A	T	H	T	G	Y	Y	T	V	D	G	M	T	Q	G	L	G	W	E	M	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					T																			G	.	.	.	.	.	.	G	G	S												T	S						T	T					S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template SS confidence
																	216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		352	.																						.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query Sequence		G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	M	T	P	T	F	G	T	L	A	S	P	Q	T	Y	G	H	T	G	W	T	.	.	.	G	T	V	T	V	I	D	P	V	N	H	M	T	I	V	M	L	S	N	K	P	H	S	P	V	A	D	P	Q	K	N	P
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	P	I	K	V	D	A	L	V	E	G	N	S	T	Q	M	A	M	E	P	H	K	V	N	W	L	T	P	P	Q	A	A	P	L	D	T	L	V	N	K	T	G	S	T	G	G	F	G	A	Y	V	A	Y	V	P	S	K	G	L	G	V	V	I	L	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S										T		S					S															S	S										S	S									T	T	T	T								S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	F	E	S	G	Q	L	P	I	A	T	Y	G	W	V	V	D	Q	V	Y	A	A	L
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	K	N	Y	P	N	A	E	R	V	K	A	A	H	A	I	L	S	A	M
Template Known Secondary structure		.	.	.	.	.	B
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions