Job Description P77619 Confidence 100.00% Date Thu Jan 5 12:31:10 GMT 2012 Rank 3 Aligned Residues 316 % Identity 24% Template c2qmiH_ PDB info PDB header:hydrolase Chain: H: PDB Molecule:pbp related beta-lactamase; PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi Resolution 2.20 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		L	N	Q	M	D	R	W	I	S	Q	Q	V	D	.	V	G	Y	P	S	V	N	L	L	I	I	K	D	N	Q	I	V	Y	R	K	A	W	G	A	A	K	K	Y	D	G	S	V	L	M	E	Q	P	V	K	A	T	T	G	T	L	Y	D	L	A	S	N	T	K	M	Y	A	T	N	F	A	L	Q	K	L	M	S
Query Conservation															.
Alig confidence															.																											.	.	.	.	.	.	.																							.
Template Conservation																																										.	.	.	.	.	.	.																							.
Template Sequence		V	G	K	L	E	S	F	I	V	E	K	M	A	E	R	K	V	P	G	I	S	I	S	I	I	K	D	G	D	V	V	Y	A	K	G	F	G	Y	R	N	.	.	.	.	.	.	.	V	E	A	R	L	P	S	T	P	E	T	I	Y	G	I	G	S	I	T	K	S	F	.	T	A	L	A	I	M	K	L	V	E
Template Known Secondary structure																T	T											T	T													.	.	.	.	.	.	.	T	T	T	T					T	T		B				G	G	G					.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.																							.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.								.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.								.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.
Query Sequence		E	G	K	L	H	P	D	D	R	I	A	K	Y	I	P	G	F	A	D	S	P	N	D	T	I	K	G	K	N	T	L	R	I	S	D	L	L	H	H	S	G	G	F	P	A	D	P	.	.	.	.	.	.	.	Q	Y	P	N	K	A	V	A	G	A	L	Y	S	Q	D	K	G	Q	T	L	E	M	I	K	R	T
Query Conservation																																																	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		E	G	G	L	S	L	D	D	P	V	E	K	F	V	N	I	K	L	.	.	.	.	.	.	R	P	F	G	E	P	V	T	V	H	H	L	L	T	H	S	S	G	I	P	S	L	G	Y	A	E	A	F	I	D	G	M	V	G	G	D	N	W	L	P	V	S	T	P	E	E	T	I	A	F	A	R	D	M	E	K
Template Known Secondary structure		T	T	S			T	T	S	B	G	G	G	T	S	S	S			.	.	.	.	.	.		G	G	G				B						T	T		S	S														T	T	T		S							S								G	G	G	G	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	E	Y	Q	P	G	S	K	H	I	Y	S	D	V	D	Y	M	L	L	G	F	I	V	E	S	V	T	G	Q	P	L	D	R	Y	V	E	E	S	I	Y	R	P	L	G	L	T	H	T	V	F	N	P	L	L	K	G	F	K	P	Q	Q	I	A	A	T	E	L	N	G	N	T	R	D	G	V	I	H	F	P
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		W	A	V	A	K	P	G	E	R	F	F	Y	L	N	T	G	Y	V	L	L	G	K	I	I	E	K	V	S	G	V	S	Y	E	E	Y	I	K	K	K	I	L	E	P	L	G	M	N	R	S	Y	F	F	K	E	E	V	E	K	D	K	D	V	A	M	G	Y	I	L	D	K	E	G	R	L	V	P	Q	.	.	.
Template Known Secondary structure		G			S		T	T	T																					S	S										T	T	G	G	G	T		T	T		B							T	T	S	S	S	B								T	T	S						.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.
Query Sequence		N	I	R	T	S	T	L	W	G	Q	V	H	D	E	K	A	F	Y	S	M	G	G	V	S	G	H	A	G	L	F	S	N	T	G	D	I	A	V	L	M	Q	T	M	L	N	G	G	G	Y	G	D	V	Q	L	F	N	A	E	T	V	K	M	F	T	T	S	S	K	.	.	.	.	.	.	.	E	D	A	T	F
Query Conservation																																																																						.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.																		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	P	Y	G	I	T	A	D	G	G	L	L	S	S	V	L	D	L	A	K	Y	L	K	M	Y	I	E	R	D	.	.	.	.	E	S	I	V	S	K	E	Y	I	E	K	M	E	T	S	Y	I	K	V	P	W	E	I	F	G	G	E	G	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T			T	T	T																		T	T		.	.	.	.		S	S	S									T	S						S			S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
																			226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.					.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	G	W	R	V	N	G	N	A	T	M	T	P	T	F	G	T	L	A	S	P	Q	T	Y	G	H	T	G	W	T	G	T	V	T	V	I	D	P	V	N	H	M	T	I	V	M	L	S	N	K	P	H	S	P
Query Conservation
Alig confidence																					.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.
Template Sequence		G	Y	G	L	I	I	Y	P	N	F	L	G	E	K	L	V	G	H	S	.	.	.	.	.	.	G	S	V	G	M	Y	T	G	Y	I	G	Y	I	P	E	K	K	I	G	V	A	V	L	E	N	S	S	G	Y	P
Template Known Secondary structure			S	S	S							T	T								.	.	.	.	.	.				S	S									G	G	G	T								S	S	S	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.							.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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