Return to main results Retrieve Phyre Job Id

Job DescriptionP77619
Confidence98.36%DateThu Jan 5 12:31:10 GMT 2012
Rank58Aligned Residues241
% Identity15%Templatec2bcfA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:probable d-alanyl-d-alanine carboxypeptidase PDBTitle: crystal structure of a evolved putative penicillin-binding2 protein homolog, rv2911, from mycobacterium tuberculosis.
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   56...60.........70.........80.........90.........100.........110.........120.........130.....
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  PSVNLLIIKDNQIVYRKAWGAAKKYDGSVLMEQPVKATTGTLYDLASNTKMYATNFALQKLMSEGKLHPDDRIAKYIPGF
Query Conservation 

 

 
   
 

     
 

   
        
 
 

 
 
 
 

   
  

  


 
 
 




  



 
Alig confidence 
















....................














.























...
Template Conservation   
  
 
  

 

   ....................
       

 


 .

   

 
 
   
         ...
Template Sequence  QTWIVADLDSGQVLAGR. . . . . . . . . . . . . . . . . . . . DQNVAHPPASTIKVL. LALVALDELDLNSTVVADVADTQA. . .
Template Known Secondary structure  STTT
....................STT

B

GGG.

TT


TGGG

...
Template Predicted Secondary structure 





....................







.









...
Template SS confidence 















































































   43......50......... 60.........70.... .....80.........90........
 
   136...140.........150.........160.........170.........180.........190.........200.... .....210....
Predicted Secondary structure 


















































.
Query SS confidence 




































































.









Query Sequence  ADSPNDTIKGKNTLRISDLLHHSGGFPADPQYPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYS. DVDYMLLGFI
Query Conservation               


  







                                   

    

.
    


 
Alig confidence  .



















..........................................





.






...
Template Conservation  .         
   

 


 .......................................... 

  
 
 

  
...
Template Sequence  . ECNCVGVKPGRSYTVRQLLD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLLLVSGNDAANTL. . .
Template Known Secondary structure  .SS





TT
..........................................S

...
Template Predicted Secondary structure  .











..........................................


...
Template SS confidence 















































































   99100.........110........ .120.........130..
 
   215....220.........230.........240.........250.........260.........270.........280.........290....
Predicted Secondary structure 



























































Query SS confidence 















































































Query Sequence  VESVTGQPLDRYVEESIYRPLGLTHTVFNPLLKGFKPQQIAATELNGNTRDGVIHFPNIRTSTLWGQVHDEKAFYSMGGV
Query Conservation 

 


        
 
  



  
              
                                       
Alig confidence 




























.............................................





Template Conservation 
   

       

  
  


  
   .............................................
  

 
Template Sequence  AHXLGGQDVTVAKXNAKAATLGATSTHAT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPSGLD
Template Known Secondary structure  TT
T
TT
B
S.............................................SSSSS
Template Predicted Secondary structure 








.............................................





Template SS confidence 















































































   133......140.........150.........160. ......
 
   295....300.........310.........320.........330.........340.........350.........360.........370....
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  SGHAGLFSNTGDIAVLMQTMLNGGGYGDVQLFNAETVKMFTTSSKEDATFGLGWRVNGNATMTPTFGTLASPQTYGHTGW
Query Conservation   




 

  




   

  
       
                 



                      

 
 
Alig confidence 






















...........













































Template Conservation       
 


 


 
       ...........
    
                
 
 

     
 
 


 
  

Template Sequence  GPGGSGASTAHDLVVIFRAAXAN. . . . . . . . . . . PVFAQIIAEPSAXFPSDEQLIVNQDELLQRYPGAIGGKTGYTNAAR
Template Known Secondary structure  BTTBS
BB
S...........
S






TSTTTTT
Template Predicted Secondary structure 










...........


















Template SS confidence 















































































   168.170.........180.........190 .........200.........210.........220.........230......
 
   375....380.........390.........400.........410.........420.........430....
Predicted Secondary structure 



















Query SS confidence 



























































Query Sequence  TGTVTVIDPVNHMTIVMLSNKPHSPVADPQKNPNMFESGQLPIATYGWVVDQVYAALKQK
Query Conservation   
     

   
 

 


                            
   

      
Alig confidence 


































............












Template Conservation     
  
   
   
 

           
     ............ 
 
 

      
Template Sequence  KTFVGAAARGGRRLVIAXXYGLVKEGGPTYWDQAA. . . . . . . . . . . . TLFDWGFALNPQA
Template Known Secondary structure  TT


TT


............S
TT
Template Predicted Secondary structure 










............




Template SS confidence 



























































   239240.........250.........260.........270... ......280......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions