Job Description P77619 Confidence 100.00% Date Thu Jan 5 12:31:10 GMT 2012 Rank 13 Aligned Residues 325 % Identity 21% Template c1zkjA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:extended-spectrum beta-lactamase; PDBTitle: structural basis for the extended substrate spectrum of cmy-2 10, a plasmid-encoded class c beta-lactamase Resolution 1.55 Å

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		41	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		N	Q	M	D	R	W	I	S	Q	Q	V	D	.	V	G	Y	P	S	V	N	L	L	I	I	K	D	N	Q	I	V	Y	R	K	A	W	G	A	A	K	K	Y	D	G	S	V	L	M	E	Q	P	V	K	A	T	T	G	T	L	Y	D	L	A	S	N	T	K	M	Y	A	T	N	F	A	L	Q	K	L	M	S	E
Query Conservation														.
Alig confidence														.																			.								.	.	.	.	.	.	.																							.
Template Conservation																																	.								.	.	.	.	.	.	.																							.
Template Sequence		P	V	V	D	A	S	I	Q	P	L	L	K	E	H	R	I	P	G	M	A	V	A	V	L	K	D	G	K	A	H	Y	.	F	N	Y	G	V	A	N	.	.	.	.	.	.	.	R	E	S	G	A	G	V	S	E	Q	T	L	F	E	I	G	S	V	S	K	T	L	.	T	A	T	L	G	A	Y	A	V	V	K
Template Known Secondary structure															T	T		S									T	T					.					B	S		.	.	.	.	.	.	.	T	T	T			B			T	T		B				G	G	G					.											T
Template Predicted Secondary structure																																	.								.	.	.	.	.	.	.																							.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	L	H	P	D	D	R	I	A	K	Y	I	P	G	F	A	D	S	P	N	D	T	I	K	G	K	N	T	L	R	I	S	D	L	L	H	H	S	G	G	F	P	A	D	P	Q	Y	P	N	K	A	V	A	G	A	L	Y	S	Q	D	K	G	Q	T	L	E	M	I	K	R	T	P	L	E	Y	Q	P	G	S
Query Conservation
Alig confidence																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Sequence		G	A	M	Q	L	D	D	K	A	S	R	H	A	P	W	L	K	.	.	.	.	.	.	G	S	A	F	D	S	I	T	M	G	E	L	A	T	Y	S	A	G	G	L	.	.	.	.	.	.	.	.	P	L	Q	F	P	E	E	V	D	S	S	E	K	M	R	A	Y	Y	R	Q	W	A	P	V	Y	S	P	G	S
Template Known Secondary structure		T	S			T	T	S	B	G	G	G	G		G	G	G	T	.	.	.	.	.	.	T	S	G	G	G	S	S	B						T	T		S	S			.	.	.	.	.	.	.	.		S	S			T	T			S														S	S		T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	I	Y	S	D	V	D	Y	M	L	L	G	F	I	V	E	S	V	T	G	Q	P	L	D	R	Y	V	E	E	S	I	Y	R	P	L	G	L	T	H	T	V	F	N	P	L	L	K	G	F	K	P	Q	Q	I	A	A	T	E	L	N	G	N	T	R	D	G	V	I	H	F	P	N	I	R	T	S	T	L	W
Query Conservation
Alig confidence																																																																											.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		H	R	Q	Y	S	N	P	S	I	G	L	F	G	H	L	A	A	S	S	L	K	Q	P	F	A	P	L	M	E	Q	T	L	L	P	G	L	G	M	H	H	T	Y	V	N	V	P	K	Q	A	M	A	S	Y	A	Y	G	Y	S	K	E	D	K	P	I	R	V	N	P	G	M	L	A	D	.	.	.	.	.	.	.
Template Known Secondary structure																					T	T	S									T					T	T		S	S		B	S	S			G	G	G	G	G	G	B						T	T										T	T			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		G	Q	V	H	D	E	K	A	F	Y	S	M	G	G	V	S	G	H	A	G	L	F	S	N	T	G	D	I	A	V	L	M	Q	T	M	L	N	G	G	G	Y	G	D	V	Q	L	F	N	A	E	T	V	K	M	F	T	T	S	S	K	E	D	A	T	F	G	L	G	W	R	V	N	G	N	A	T	M	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																																					.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	Y	G	I	K	T	S	S	A	D	L	L	R	F	V	K	A	N	I	G	G	V	.	.	D	D	K	A	L	Q	Q	A	I	S	L	T	H	Q	G	H	Y	S	V	G	G	M	T	Q	G	L	G	W	E	S	Y	A	Y	P	V	T	E	Q	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	T			.	.	S											T	T	S						T	T					S	S						S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
																		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
														357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	T	P	T	F	G	T	L	A	S	P	Q	T	Y	G	H	T	G	W	T	.	.	.	G	T	V	T	V	I	D	P	V	N	H	M	T	I	V	M	L	S	N	K	P	H	S	P	V	A	D	P	Q	K	N	P	N	M	F	E	S	G	Q	L	P	I	A	T	Y	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	A	G	N	S	A	K	V	I	L	E	A	N	P	T	A	A	P	R	E	Q	V	L	F	N	K	T	G	S	T	N	G	F	G	A	Y	V	A	F	V	P	A	R	G	I	G	I	V	M	L	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	Y	P	I	E	A	R	I
Template Known Secondary structure						T	S						S					B															T	T									G	G	G	T								S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.																			.	.	.	.	340	.	.	.	.
		422	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	V	D	Q	V	Y	A	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	A	H	A	I	L	A	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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