 |
Job Description | P12996 | Confidence | 75.10% | Date | Thu Jan 5 11:33:15 GMT 2012 |
Rank | 184 | Aligned Residues | 97 |
% Identity | 19% | Template | c3s5oA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial; |
PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate
|
Resolution | 1.97 Å |
|
 |
  |   |
136 | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | |
. | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | S | Q | A | Q | R | L | A | N | A | G | L | D | Y | Y | N | H | N | L | D | T | S | P | E | F | Y | G | N | I | I | T | T | R | T | Y | Q | E | R | L | D | T | L | E | K | V | R | D | A | G | I | K | V | C | S | G | G | I | V | G | L | . |
G | E | T | V | K | D | R | A | G | L | L | L | Q | L | A | N | L | P | T |
Query Conservation |   |
  |
|   |
|   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|
|   |
|   |   |
|   |
|   |
|
| . |
|
|
|   |
|
|   |   |   |   |
|   |   |
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |
|   |
|
|
|
|
|   |   |   | . | . | . | . | . | . |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   | . |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
Template Sequence |   |
E | E | N | L | H | K | L | G | T | F | P | F | R | G | F | V | V | Q | G | S | N | G | E | F | P | F | . |
. |
. |
. |
. |
. |
L | T | S | S | E | R | L | E | V | V | S | R | V | R | Q | A | M | P | K | . |
N | R | L | L | L | A | G | S | G | C | E | S | T | Q | A | T | V | E | M | T | V | S | M | A | Q | V | G | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  | S | S | G | G | G | T | G | G | G | . | . | . | . | . | . | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
| T | . | T | S |  |  |  |  |  |
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 |
  |
  |   |
215 | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | P | E | S | V | P | I | N | M | L | V | K | V | K | G | T | P | L | A | D | N | D | D | V | D | A | F | D | F | I | R | T | I | A |
Query Conservation |   |
  |   |   |   |
|   |
|   |   |
|   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
Alig confidence |   |
. | . |
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . |
|   |
|
|
|   | . | . | . | . | . | . | . |   |
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
Template Sequence |   |
. |
. |
D | A | A | M | V | V | . |
. |
. |
. |
. |
. |
. |
T | P | C | Y | Y | R | G | R | M | S | S | A | A | L | I | H | H | Y | T |
Template Known Secondary structure |   |
. | . | S |  |  |  |  |  | . | . | . | . | . | . | . |
|
|
| T | T | G | G | G |
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . |
|  |  |  |  |  | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
131 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|