Job Description P12996 Confidence 99.71% Date Thu Jan 5 11:33:15 GMT 2012 Rank 8 Aligned Residues 200 % Identity 14% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	R	Q	V	Q	V	S	T	L	L	S	I	K	T	G	A	C	P	E	D	C	K	Y	C	P	Q	S	S	R	Y	K	T	G	L	E	A	E	R	L	M	E	V	E	Q	V	L	E	S	A	R	K	A	K	A	.	.	.	.	.	.	.	.	.	.	A	G	S	T	R	F	C	M	G	A	A	W	K	N	P
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.				.													.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.				.													.	.	.	.	.
Template Sequence		E	D	D	R	A	T	L	C	.	.	V	S	S	.	Q	V	G	C	A	L	E	C	K	F	C	S	.	.	.	.	.	T	A	Q	Q	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M	G	M	G	E	P	L
Template Known Secondary structure			S	S						.	.				.					S	S			T	T		G	.	.	.	.	.	G	G	T	T																													S	S		S		S						S	S	S		G	G
Template Predicted Secondary structure										.	.				.													.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.			.	120	.		.	.	.	.	.	.	.	.	130	.	.	.						.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.																																			.									.	.	.
Query SS confidence																			.	.	.	.	.																																			.									.	.	.
Query Sequence		H	E	R	D	M	P	Y	L	E	Q	M	V	Q	G	V	K	A	.	.	.	.	.	M	G	L	E	A	C	M	T	L	G	T	L	S	E	S	Q	A	Q	R	L	A	N	A	G	L	D	Y	Y	N	H	N	L	D	T	.	S	P	E	F	Y	G	N	I	.	.	.	I	T	T	R	T	Y	Q	E	R	L	D	T
Query Conservation																			.	.	.	.	.																																			.									.	.	.
Alig confidence		.	.																.	.	.	.	.																																			.									.	.	.
Template Conservation		.	.
Template Sequence		.	.	L	N	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T	F	L	A	A
Template Known Secondary structure		.	.	G														S	T	T	T	T				G	G	G						S																								S	S								S	G	G	G	G	T	S
Template Predicted Secondary structure		.	.
Template SS confidence
				183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		177	.	.	180	.	.	.	.							.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.
Query Sequence		L	E	K	V	R	D	A	G	.	.	.	.	.	.	I	K	V	C	S	G	G	I	V	G	L	G	E	T	V	K	D	R	A	G	L	L	L	Q	L	A	N	L	P	T	P	P	E	S	V	P	I	N	M	L	V	K	V	K	G	T	P	L	A	D	N	D	D	V	D	A	F	D	F	I	R	T	I	A
Query Conservation										.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																															.	.	.
Template Conservation																																														.	.	.
Template Sequence		V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	.	.	.	K	I	N	L	I	P	W	N	P	F	P	G	A	P	Y	G	R	S	S	N	S	R	I	D	R	F	S	K	V	L	M
Template Known Secondary structure										T	T	T	T	T									B	T	T	T	T		S											T	T	T	S			.	.	.											T	T					B
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.				.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions